Tc10v2_t001960.2

Overview
NameTc10v2_t001960.2
Unique NameTc10v2_t001960.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1425
Properties
Property NameValue
NoteAuxin transporter-like protein 2
Productauxin transporter-like protein 2, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 71 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Cross References
External references for this mRNA
DatabaseAccession
GeneID18585913
GenbankXM_007008985.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g001960Tc10v2_g001960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p001960.2Tc10v2_p001960.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto489935auto489935Theobroma cacaoexon
exon-auto489936auto489936Theobroma cacaoexon
exon-auto489937auto489937Theobroma cacaoexon
exon-auto489938auto489938Theobroma cacaoexon
exon-auto489939auto489939Theobroma cacaoexon
exon-auto489940auto489940Theobroma cacaoexon
exon-auto489941auto489941Theobroma cacaoexon
exon-auto489942auto489942Theobroma cacaoexon
exon-auto489943auto489943Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto489944auto489944Theobroma cacaoCDS
CDS-auto489945auto489945Theobroma cacaoCDS
CDS-auto489946auto489946Theobroma cacaoCDS
CDS-auto489947auto489947Theobroma cacaoCDS
CDS-auto489948auto489948Theobroma cacaoCDS
CDS-auto489949auto489949Theobroma cacaoCDS
CDS-auto489950auto489950Theobroma cacaoCDS
CDS-auto489951auto489951Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t001960.2 ID=Tc10v2_t001960.2|Name=Tc10v2_t001960.2|organism=Theobroma cacao|type=mRNA|length=1425bp
ATGTCAGGACAGAAACAGGCTGAGGAAGCAATTGTTCCAAGCCTTAATGA
GGCTTCTGAACATGAAGAGAAAGAGGAAGAGAAGGGAGATCATTCCATCT
TCAGTGTTAAGAGCCTTCTTTGGCATGGTGGTTCTGTTTATGATGCCTGG
TTTAGCTGTGCTTCAAATCAGGTGGCTCAAGTTCTGTTAACACTACCATA
TTCTTTCTCTCAAATGGGAATGCTTTCGGGGATTATTCTGCAGATTTTTT
ATGGCTTTCTTGGAAGCTGGACTGCTTATCTCATCAGTGTTCTGTATATT
GAGTACCGAAGCAGAAAGGAGAAAGAGAATGTCAGCTTCAAGAACCATGT
CATACAGTGGTTTGAAGTGCTAGATGGTCTCTTGGGACCTTACTGGAAAG
CTGTTGGATTGGCTTTTAACTGCACTTTTCTGCTCTTTGGATCTGTCATT
CAGCTTATAGCCTGTGCCAGCAACATATATTACATAAATGACAAGTTAGA
CAAGAGGACATGGACTTATATCTTTGGAGCTTGCTGTGCTACCACAGTCT
TCATCCCCTCATTTCACAACTATAGAATGTGGTCTTTTCTGGGGCTCGGC
ATGACCACCTACACTGCTTGGTATCTGACCATAGCAGCCCTTGTCCATGG
CCAGGTGGAGGGTGTAACTCACCAAGGTCCAACTAAGTTGGTTTTGTACT
TCACTGGCGCCACCAATATCCTCTATACTTTCGGCGGACATGCTGTCACT
GTTGAAATTATGCATGCGATGTGGAAGCCTCAGAAATTCAAGTGCATATA
CCTATTGGCCACTCTCTATGTTTTCACGCTAACCATCCCATCTGCTGCTG
CTGTCTATTGGGCTTTCGGTGATCAACTCCTTAACCATTCCAATGCCTTT
TCACTCCTTCCACACTCTGGATGGCGTGATGCAGCAGTTGTGCTAATGTT
AATTCACCAGTTTATTACATTTGGGTTTGCTTGTACGCCATTGTACTTTG
TGTGGGAGAAAGTGGTGGGGATGCATGATACAAAAAGCATATGTTTGAGG
GCAGTATGCCGCTTACCTGTGGTGATACCTATCTGGTTCTTGGCTATCAT
ATTTCCTTTCTTTGGTCCCATTAACTCGGCTGTAGGATCTCTTCTGGTCA
GCTTCACTGTCTACATCATCCCTGCCTTGGCTCATATGCTCACTTATAAA
TCAGCCTCCGCCCGACAGAATGCAGCTGAGAAGCCTCCTTTCTTCCTCCC
AAGCTGGACAGCAGTGTATGCAGTGAACACATTCATTGTGGCATGGGTCT
TCGTAGTTGGCTTTGGATTGGGAGGTTGGGCTAGTATGACAAACTTCATC
AAGCAAGTCGATACATTCGGGCTCTTTGCCAAGTGCTACCAATGCCCACC
CTCACCATCATCAAAGCATCACTGA
back to top

protein sequence of Tc10v2_p001960.2

>Tc10v2_p001960.2 ID=Tc10v2_p001960.2|Name=Tc10v2_p001960.2|organism=Theobroma cacao|type=polypeptide|length=475bp
MSGQKQAEEAIVPSLNEASEHEEKEEEKGDHSIFSVKSLLWHGGSVYDAW
FSCASNQVAQVLLTLPYSFSQMGMLSGIILQIFYGFLGSWTAYLISVLYI
EYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVI
QLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRMWSFLGLG
MTTYTAWYLTIAALVHGQVEGVTHQGPTKLVLYFTGATNILYTFGGHAVT
VEIMHAMWKPQKFKCIYLLATLYVFTLTIPSAAAVYWAFGDQLLNHSNAF
SLLPHSGWRDAAVVLMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLR
AVCRLPVVIPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMLTYK
SASARQNAAEKPPFFLPSWTAVYAVNTFIVAWVFVVGFGLGGWASMTNFI
KQVDTFGLFAKCYQCPPSPSSKHH*
back to top