Tc09v2_t015080.10

Overview
NameTc09v2_t015080.10
Unique NameTc09v2_t015080.10
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length336
Properties
Property NameValue
NoteUncharacterized protein
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productuncharacterized LOC18589274, transcript variant X7
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589274
GenbankXM_018126993.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g015080Tc09v2_g015080Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p015080.10Tc09v2_p015080.10Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto452940auto452940Theobroma cacaoexon
exon-auto452941auto452941Theobroma cacaoexon
exon-auto452942auto452942Theobroma cacaoexon
exon-auto452943auto452943Theobroma cacaoexon
exon-auto452944auto452944Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto452945auto452945Theobroma cacaoCDS
CDS-auto452946auto452946Theobroma cacaoCDS
CDS-auto452947auto452947Theobroma cacaoCDS
CDS-auto452948auto452948Theobroma cacaoCDS
CDS-auto452949auto452949Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t015080.10 ID=Tc09v2_t015080.10|Name=Tc09v2_t015080.10|organism=Theobroma cacao|type=mRNA|length=336bp
ATGACTCTCGACCTACTACATGATCATAGTTGCTCCTCATATTTTATCAG
CGGCAGGATCCCTTTGTTTGGCAGGCTTAAGGTGATGGTCATCAGATTAC
AGGACTTGTTGCAAGAGGAGCAATGCTTTCTGGTCTTTCACATTGAATGC
AGTTCAATGTATCATACTGCTGCTGAAGTGGGATGCCAGTGGGTCTTAAA
AATGCATTCGAACTTTGGGTTTGAGGCAGATTTCAATTTTCTGATGGCTA
CAATATTAAAGATGGGAGACCTCGGGATTGCCAGGAGATCTAGGGAAGGA
GGAGGGCTGTCTCACATGGTGTGGCCCAGCCATTGA
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protein sequence of Tc09v2_p015080.10

>Tc09v2_p015080.10 ID=Tc09v2_p015080.10|Name=Tc09v2_p015080.10|organism=Theobroma cacao|type=polypeptide|length=112bp
MTLDLLHDHSCSSYFISGRIPLFGRLKVMVIRLQDLLQEEQCFLVFHIEC
SSMYHTAAEVGCQWVLKMHSNFGFEADFNFLMATILKMGDLGIARRSREG
GGLSHMVWPSH*
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