Tc09v2_t008800.1

Overview
NameTc09v2_t008800.1
Unique NameTc09v2_t008800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1776
Properties
Property NameValue
NoteNADP-dependent malic enzyme
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductNADP-dependent malic enzyme
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591982
GenbankXM_007018442.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g008800Tc09v2_g008800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p008800.1Tc09v2_p008800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto439562auto439562Theobroma cacaoexon
exon-auto439563auto439563Theobroma cacaoexon
exon-auto439564auto439564Theobroma cacaoexon
exon-auto439565auto439565Theobroma cacaoexon
exon-auto439566auto439566Theobroma cacaoexon
exon-auto439567auto439567Theobroma cacaoexon
exon-auto439568auto439568Theobroma cacaoexon
exon-auto439569auto439569Theobroma cacaoexon
exon-auto439570auto439570Theobroma cacaoexon
exon-auto439571auto439571Theobroma cacaoexon
exon-auto439572auto439572Theobroma cacaoexon
exon-auto439573auto439573Theobroma cacaoexon
exon-auto439574auto439574Theobroma cacaoexon
exon-auto439575auto439575Theobroma cacaoexon
exon-auto439576auto439576Theobroma cacaoexon
exon-auto439577auto439577Theobroma cacaoexon
exon-auto439578auto439578Theobroma cacaoexon
exon-auto439579auto439579Theobroma cacaoexon
exon-auto439580auto439580Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto439581auto439581Theobroma cacaoCDS
CDS-auto439582auto439582Theobroma cacaoCDS
CDS-auto439583auto439583Theobroma cacaoCDS
CDS-auto439584auto439584Theobroma cacaoCDS
CDS-auto439585auto439585Theobroma cacaoCDS
CDS-auto439586auto439586Theobroma cacaoCDS
CDS-auto439587auto439587Theobroma cacaoCDS
CDS-auto439588auto439588Theobroma cacaoCDS
CDS-auto439589auto439589Theobroma cacaoCDS
CDS-auto439590auto439590Theobroma cacaoCDS
CDS-auto439591auto439591Theobroma cacaoCDS
CDS-auto439592auto439592Theobroma cacaoCDS
CDS-auto439593auto439593Theobroma cacaoCDS
CDS-auto439594auto439594Theobroma cacaoCDS
CDS-auto439595auto439595Theobroma cacaoCDS
CDS-auto439596auto439596Theobroma cacaoCDS
CDS-auto439597auto439597Theobroma cacaoCDS
CDS-auto439598auto439598Theobroma cacaoCDS
CDS-auto439599auto439599Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t008800.1 ID=Tc09v2_t008800.1|Name=Tc09v2_t008800.1|organism=Theobroma cacao|type=mRNA|length=1776bp
ATGGAGAGCACAATGAAGGAGATGAGAGGCGGGGCCTCAGTGCTTGACAT
GGATCCCAAATCCACCGTTGGCGGCGGCGTTGAGGATGTCTACGGTGAGG
ATTGTGCCACTGAGGACCAACTCGTCACTCCCTGGACTTACTCTGTCGCC
AGTGGATATTCATTGTTGAGGGATCCACACCATAACAAAGGGCTTGCATT
CACTGAGGCAGAGAGGGATTCTCACTACTTGCGTGGTCTACTGCCTCCTG
CTGTTGTCACTCAACAACTTCAGGAGAAAAAATTGATGAGCAGTATCCGG
AAATATCAAGTTCCGTTGCAAAAATACATGGCCATGATGGAGCTTCAGGA
AAGAAACGAAAGACTGTTTTACAAGCTTCTAATCGACAATGTTGAGGAGC
TTCTCCCAGTTGTCTATACTCCAACTGTAGGTGAAGCTTGCCAGAAGTAT
GGAAGCATCTTCAGGCGTCCTCAGGGACTCTACATAAGTTTGAAAGAGAA
GGGAAAAGTTCTTGATGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAAG
TCATTGTTGTTACTGATGGCGAGCGTATTTTGGGACTTGGGGATCTTGGT
TGTCAGGGGATGGGAATTCCAGTTGGGAAATTGTCTTTATACACAGCACT
TGGAGGGGTTCGTCCTTCAGCGTGTTTGCCTGTGACCATTGATGTGGGCA
CAAATAATGAGGAATTGTTGAAGAATGAATTCTACATAGGGCTTAGACAG
AGGAGGGCAACTGGGCAGGAATACGCTGACTTGCTACATGAATTTATGAC
TGCTGTCAAGCAGAACTATGGGGAAAAAGTTCTTATACAGTTTGAAGATT
TTGCAAACCATAATGCTTTTACATTGCTTGCAAAATATGGCACAACCCAC
CTTGTCTTCAATGATGACATACAGGGGACAGCATCTGTTGTTCTTGCTGG
GGTTGTTGCAGCATTGAAGTTGATTGGTGGTTCTCTAGCTGACCACACAT
TCTTGTTCCTTGGTGCTGGGGAAGCTGGGACTGGTATAGCAGAGCTTATA
GCTCTTGAGATGTCAAAGCAGACAAAAGCTCCCGTGGAAGAGACCCGTAA
GAAGATCTGGCTTGTGGACTCAAAGGGACTGATTGTTAGCTCTCGTAAAG
AGTCGCTTCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAACCTGTT
AAGGATCTATTAGGTGCTGTCAAGGCAATCAAGCCAACAGTTTTGATTGG
GTCATCCGGAGTGGGAAGAACTTTTACAAAGGAAATAATTGAGACCCTGT
CCTCCTTCAATGAGAAACCTCTTATTATGGCTCTTTCCAATCCAACCTCA
CAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGTCGGGGCCGTGC
AATTTTTGCAAGTGGAAGTCCATTTGATCCTTTTGAATACAATGGCAAAG
TTTTTGTTCCTGGCCAGGCCAACAATGCTTACATTTTCCCAGGATTTGGT
TTGGGTTTGGTCATCTCTGGAGCAATTCGCGTGCATGATGACATGCTTCT
GGCAGCCTCCGAAGCCTTGGCTAAGCAAGTTTCTGAGGAAAACTATGACA
AGGGGCTTATTTACCCACCCTTCTCTAATATAAGGAAAATTTCAGCTAAT
ATAGCAGCTAACGTGGCTGCCAAGGCATATGAACTTGGTGTGGCAACACG
CCTCCCTCGTCCTGCCAATCTTGTCAAGTATGCTGAGAGTTGCATGTATT
CTCCTCTCTACCGAACTTACCGGTGA
back to top

protein sequence of Tc09v2_p008800.1

>Tc09v2_p008800.1 ID=Tc09v2_p008800.1|Name=Tc09v2_p008800.1|organism=Theobroma cacao|type=polypeptide|length=592bp
MESTMKEMRGGASVLDMDPKSTVGGGVEDVYGEDCATEDQLVTPWTYSVA
SGYSLLRDPHHNKGLAFTEAERDSHYLRGLLPPAVVTQQLQEKKLMSSIR
KYQVPLQKYMAMMELQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKY
GSIFRRPQGLYISLKEKGKVLDVLKNWPERSIQVIVVTDGERILGLGDLG
CQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEELLKNEFYIGLRQ
RRATGQEYADLLHEFMTAVKQNYGEKVLIQFEDFANHNAFTLLAKYGTTH
LVFNDDIQGTASVVLAGVVAALKLIGGSLADHTFLFLGAGEAGTGIAELI
ALEMSKQTKAPVEETRKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPV
KDLLGAVKAIKPTVLIGSSGVGRTFTKEIIETLSSFNEKPLIMALSNPTS
QSECTAEEAYTWSRGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG
LGLVISGAIRVHDDMLLAASEALAKQVSEENYDKGLIYPPFSNIRKISAN
IAANVAAKAYELGVATRLPRPANLVKYAESCMYSPLYRTYR*
back to top