Tc08v2_t012960.1

Overview
NameTc08v2_t012960.1
Unique NameTc08v2_t012960.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length750
Properties
Property NameValue
NotePutative Extensin-3
Model evidenceSupporting evidence includes similarity to: 27 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productextensin
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592582
GenbankXM_007019395.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g012960Tc08v2_g012960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p012960.1Tc08v2_p012960.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto411429auto411429Theobroma cacaoexon
exon-auto411430auto411430Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto411431auto411431Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t012960.1 ID=Tc08v2_t012960.1|Name=Tc08v2_t012960.1|organism=Theobroma cacao|type=mRNA|length=750bp
ATGGGAAAAATGGGGTCTTCAATGACCTCTCTCTTCGTCACTCTCCTAGT
GCTAGCAGTGTCTCTCAGCTTGCCTTCTGAAACCACAGCAAACTACCCTT
ACGCATCTCCTCCGCCACCACCTCACTACTACTACAAGTCACCACCTCCT
CCTCCTCCGGTGTACTCTCCGCCACCACCCAAGATACCTTACAAGTACCC
GTCTCCTCCCCCACCAGTACACTATCCTCCACCACCTTACGAGTACAAGT
CTCCCCCTCCTCCTCCCCCAGTTTACAAGTACAAGTCTCCTCCACCTCCA
CCAAAGCACCCCTACAAGTATAAGTCTCCTCCCCCACCACCTCCAGTTTA
CAAGTATAAGTCCCCTCCACCACCACCACCATCACCACCCAAGCACCCAT
ACCAGTACAAGTCTCCACCTCCACCACCCCCAGTTTACAAGTACAAGTCC
CCTCCACCACCACCACCATCACCACCCAAGCACCCATACAAGTACAAGTC
TCCTCCACCACCTCCTCCAGTCTACAAATACAAGTCTCCTCCTCCTCCCC
CTAAGGAGCCTTACAAGTATAAGTCTCCTCCACCACCTCCTCCAGTTTAC
AAGTACAAGTCTCCTCCTCCTCCTCCTCCAAAGGAGCCATACAAGTACAA
GTCTCCCCCACCACCCCCTCCAGTCTACAAGTACAAGTCTCCTCCACCAC
CACCACCCCATTACGTCTATTCATCACCCCCTCCTCCTCACCACTACTAA
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protein sequence of Tc08v2_p012960.1

>Tc08v2_p012960.1 ID=Tc08v2_p012960.1|Name=Tc08v2_p012960.1|organism=Theobroma cacao|type=polypeptide|length=250bp
MGKMGSSMTSLFVTLLVLAVSLSLPSETTANYPYASPPPPPHYYYKSPPP
PPPVYSPPPPKIPYKYPSPPPPVHYPPPPYEYKSPPPPPPVYKYKSPPPP
PKHPYKYKSPPPPPPVYKYKSPPPPPPSPPKHPYQYKSPPPPPPVYKYKS
PPPPPPSPPKHPYKYKSPPPPPPVYKYKSPPPPPKEPYKYKSPPPPPPVY
KYKSPPPPPPKEPYKYKSPPPPPPVYKYKSPPPPPPHYVYSSPPPPHHY*
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