Tc06v2_t019460.4

Overview
NameTc06v2_t019460.4
Unique NameTc06v2_t019460.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1431
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productheterogeneous nuclear ribonucleoprotein 1, transcript variant X3
NoteRNA-binding family protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597296
GenbankXM_018123114.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g019460Tc06v2_g019460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p019460.4Tc06v2_p019460.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto351960auto351960Theobroma cacaoexon
exon-auto351961auto351961Theobroma cacaoexon
exon-auto351962auto351962Theobroma cacaoexon
exon-auto351963auto351963Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto351964auto351964Theobroma cacaoCDS
CDS-auto351965auto351965Theobroma cacaoCDS
CDS-auto351966auto351966Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t019460.4 ID=Tc06v2_t019460.4|Name=Tc06v2_t019460.4|organism=Theobroma cacao|type=mRNA|length=1431bp
ATGGAAATGGAGCTTGGGAAGCTATTCATTGGTGGGATTTCTTGGGACAC
AAATGAGGACCGTCTTCGAGAGTATTTTCAAGCTTTTGGGGATGTTGTGG
AAGCTGTGATAATGAGGGATCGGGCTACTGGTCGTGCTCGCGGATTCGGG
TTTGTTGTTTTTGCTGACCCGGCTATTGCAGAAAGAGTTGTTATGGAAAA
GCACATGATAGATGGTAGAACTGTTGAGGCAAAGAAGGCAGTTCCTAGGG
ATGACCAGAACATACTAAACAAGAGCAATGTTAGCATTCATGGATCACCT
GGTCCTGCTCGCACAAAAAAGATATTTGTAGGAGGCTTAGCATCCACAGT
CACTGAGAGTGACTTTAAGAGGTACTTTGATCAGTTTGGTACAATTACAG
ATGTTGTTGTGATGTATGATCACAACACTCAGAGGCCACGAGGTTTTGGA
TTCATTACTTATGATTCAGAGGAAGCTGTCGATAAAGTCTTGCAGAGAAC
ATTTCATGAACTCAATGGAAAAATGGTTGAGGTCAAGCGGGCTGTCCCCA
AAGAATCATCTCCGGGGCCAAGTCGGAACCAGTTAGGTGGGTATAACTTT
GGTCTGAGTAGAGTCAATAGCTTCCTTAATGGCTACATGCAGGGTTATAA
TACTAGTTCAGTTGGAGGTTATGGTTTTAGAATGGAAGGTAGATTTAGTC
CAGTTACTGCTGGTCGGAGTGGATTTCCTCCATTGAGTCCTGGTTATGGG
ATGGGACTGAATTTTGAGTCAAATTTGAGTCCAAGCTACGGAGGAAGCTC
AAACCTTGGTTCTAACCTCAGCTATGGACGGGGATTGTACACTTCATTTA
ATGGAAATTCAAACAGGTTTGGTAGCCCCTTTGGATATGGTGGGGGCAGT
GGAGGAAATAGTTCTATCTTAAACTCAGCAGGTCGAAATATGTGGGGAAA
TGGAAGTTTTAACTATGCTACTAACTCCACAACCTCTAGTGCCATTGTGG
GCTCTGGAAGTGGGAATTCAGGAGTGAGTTCTTTTGGCAGCATAGGTGCA
CTTTGGGATTCCTCTCCTAGTTTAGGTCAAGGTGGAGGTGCTGCTTCTGC
TTATAATGGTGGCAATCTTAGATATGGAAGTGGAGATTTTGGTGTTGGAT
CAGGAGGGATAGGCTATGGAAGAAACAGCAATGTTGCTCAGTTATCAACC
CATGGTGCTTCAAATGGTGGTTATGACGGGGCTTATGCCAATATTTATGA
AAATGGTTCATTTTATGGGGATTCCACTTGGCGATCTTCACCCTCAGACC
TAGAGCGGTCTAGTTCTTTTGGTTTTGGGCTGGGAGATGCAAGTTCAGAT
GTTATGACTAATAACTCTGCTGATTACATTGGTGGTTATAGTGTTACCAA
TAGGCAGGCAAATAGAGGGATTGCTGCATAG
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protein sequence of Tc06v2_p019460.4

>Tc06v2_p019460.4 ID=Tc06v2_p019460.4|Name=Tc06v2_p019460.4|organism=Theobroma cacao|type=polypeptide|length=477bp
MEMELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATGRARGFG
FVVFADPAIAERVVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSP
GPARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMYDHNTQRPRGFG
FITYDSEEAVDKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGGYNF
GLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYG
MGLNFESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGSPFGYGGGS
GGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGA
LWDSSPSLGQGGGAASAYNGGNLRYGSGDFGVGSGGIGYGRNSNVAQLST
HGASNGGYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD
VMTNNSADYIGGYSVTNRQANRGIAA*
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