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Properties
| Property Name | Value |
|---|
| Model evidence | Supporting evidence includes similarity to: 8 ESTs, 49 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns |
| Product | phytochrome A, transcript variant X1 |
| Note | Phytochrome A |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc05v2_t027580.2 ID=Tc05v2_t027580.2|Name=Tc05v2_t027580.2|organism=Theobroma cacao|type=mRNA|length=3366bp
ATGTCTTCTTCAAGGCCAAGTCATTCATCTAGCAACTCTGGGAGATCAAG
GCACAGTGCCAGGATTATTGCTCAAACCACAGTTGATGCAAAACTCCATG
CAAATTTTGAGGAGTCCGGTAGCTCCTTTGACTATTCAAGTTCAGTGCGT
GCAAGTGGAGACCAGCAATCTAGGTCAGACAGGGTTACCACAGCTTATCT
CCATCAAATACAGAAAGGCAAATTCATCCAACCCTTTGGGTGCTTGCTAG
CCTTAGATGAGAAAACTTACAAGGTCATAGCATACAGTGAGAATGCCCCT
GAAATGTTGACCATGGTTAGTCATGCAGTCCCAAGTGTTGGGGACCACCC
AGTTCTTGGCATTGGAACTGACATAAAAACTATTTTCACAGCCCCCAGTT
CCTCTGCATTGCTAAAGGCCCTAGGAATTGGGGAGGTTTCTCTTTTGAAT
CCAATCTTGGTCCATTGCAAGACTTCTGGGAAGCCCTTTTACGCAATAAT
CCATCGGGTAACAGGGAGCTTGATCATTGATTTTGAACCTGTGAAGCCCT
ATGAAGTTCCCATGACTGCTGCTGGGGCCTTGCAGTCATACAAGCTAGCG
GCAAAAGCAATTACTCGCTTGCAGTCTCTGCCTAGTGGTAGCATGGAAAG
GCTTTGTGATACAATGGTGCAGGAGGTTTTTGAACTCACTGGTTATGACA
GGGTGATGGCCTATAAATTTCACGATGACGACCATGGGGAAGTGGTTTCT
GAGATAACAAAGCCAGGCCTAGAGCCTTACTTAGGTTTGCATTATCCAGC
CACTGATATCCCTCAGGCTGCTCGATTTTTGTTTATGAAGAATAAAGTCC
GCATGATTGTTGATTGCCGCGCAAAACATGTAAAAGTATTTCAAGATGAT
AAGCTTGCTTTTGACCTAACCTTGTGTGGTTCAACCCTAAGGGCCCCACA
CAGCTGCCATTTACAGTATATGGAGAACATGAATTCCATTGCTTCTCTGG
TTATGGCTGTTATTGTCAATGATGGAGATGAAGAGGGCGATGGCCCTGAT
TCTGCACAGCCACAGCAAAAAAGAAAGAGACTGTGGGGTTTGGTAGTGTG
CCATAACACCACTCCTAGGTTTGTTCCATTCCCCCTCAGGTATGCCTGTG
AATTTCTAGCTCAAGTCTTTGCCATCCATGTCAATAAGGAGATAGAGTTG
GAAAATCAAATTATCGAGAAGAATATTCTGCGTACCCAGACCCTTTTGTG
TGATATGCTTTTGCGGGATGCACCCATGGGCATTATCTCACAAAGCCCAA
ACATAATGGATTTGGTGAAATGTGATGGGGCTGCATTATTATACAAGAAC
AAAATATGGAAACTAGGAGTAACTCCTAGTGATTTCCAGCTGCATGAGAT
AGCATCATGGCTTTCTGAGTATCATATGGATTCCACAGGTCTGAGTACTG
ATAGCTTGTATGATGCTGGGTTCCCAGGGGCATTGGCTCTTGGTGATGTA
GTATGTGGAATGGCAGCTGTGAGGATAACCCTCAAGGATATGCTTTTCTG
GTTCCGGTCCCATACTGCTGCAGAAATTCGATGGGGTGGTGCAAAGCATG
AACCTGGTGAGAAGGATGATGGCAGGAAGATGCACCCAAGGTCATCATTC
AAGGCTTTCCTCCAAGTTGTCAAGACAAGGAGTATGCCATGGAAGGACTA
TGAAATGGATGCAATCCATTCTTTGCAGCTTATTCTAAGGAATGCATTCA
AAGATGTTGAGACCACAGATACTAACACTAGTGCCATACATTCAAAGCTC
AGTGACCTCAAAATAGAAGGGATGCAAGAACTGGAGGCAGTGACAAGTGA
GATGGTTCGTTTAATTGAAACAGCGACAGTGCCAATTTTGGCTGTTGATG
TTGATGGCTTGGTTAATGGGTGGAATATGAAAATTGCCGAGTTGACTGGT
CTTCCTGTTGATAAAGCAATTGGAAAGCATTTACTCTCACTTGTTGAAGA
TTCTTCTGTTGAAACTGTCAAGCAAATGTTAGTACTGGCATTGCAGGGCA
AGGAAGAAAAGAACATCCAATTTGAGATCAAAACTCATGGGTCAAGGATT
GAGGCTGGCCCCATCAGTTTAGTTGTCAATGCTTGTGCAAACAGGGATCT
TCACGAAAATGTTGTGGGGGTTTGTTTTGTGGCACAAGATATAACTGGTC
AGAAGATTGTCATGGACAAATTCACCCGGATTGAAGGTGATTACAAAGCA
ATTGTACAAAATCCAAACCCACTGATTCCTCCCATATTTGGTATGGATGA
ATTTGGCTGGTGCTCTGAGTGGAATCCAGCTATGACGAAGTTAACTGGGT
GGAAGCGAGACGAAGTGGTAGATAAAATGCTGTTGGGGGAGGTTTTTGGG
ACCCACATTGCATGCTGTCGTCTCAAGAGTCAAGAATCTTTTGTCAATCT
TGGTGTTGTACTTAATAATGCCATGACTGGTCATGAGCCTGAAAAGGTTC
CTTTTGGTTTCTTTGCTCGCAGTGGAAAGTATGTGGAATGCTTGTTATGT
GTAAATAAGAAATTGGACAGAGAGGATGCTGTCACTGGTGTCTTTTGTTT
CTTGCAGCTGGCAAGCCATGAGCTACAACAAGCACTTCATGTCCAGCGAT
TATCAGAGCAAACTGCCATGAAAAGATTGAAAGCATTAGCTTATCTGAAA
AGGCAGATCCGTAATCCTCTCTCTGGGATTATTTTTTCAAGGAAAATGAT
GGAGGGCACAGAATTGGGACCAGAACAAAAACGCCTTCTGCAGACTAGTA
CCCTGTGCCAGCGCCAGCTCAGCAAAATACTTGATGATTCAGATCTTGAT
AGCATCATTGACGGCTACTTGGATCTTGAAATGATTGACTTCACCCTGCA
TGAGGTATTGGTTGCTTCTATTAGTCAAGTGATGATGAAGAGCAATGGGA
AAGGTATCCGCATAGTCAATGATACAGAAGAAGAGGTCATGACTGAGACC
TTGTATGGAGACAGTGTTAGACTTCAACAGGTCTTGGCTGATTTCTTGTT
GATATCAGTTAATTTTACACCAAATGGAGGCCAACTTGTTGTTGTAGCTA
GCTTGACCAAAGATCAACTTGGACAGTCAGTTCATCTTGCACATTTGGAG
CTCAGGATAACACATGCAGGTGGCGGAGTGCCAGAAGCATTGCTGAGCCA
AATGTTTGGAAGTGATGGAGATGCATCAGAGGAGGGTATCAGTTTGCTCA
TCAGCCGAAAGTTGGTAAAACTCATGAATGGAGATATCCAGTATTTAAGG
GAAGCAGGCAGGTCAACTTTCATCGTGACCGTCGAACTAGCTGCAGCAAA
TAGGTCCAGAACCTAA back to topprotein sequence of Tc05v2_p027580.2 >Tc05v2_p027580.2 ID=Tc05v2_p027580.2|Name=Tc05v2_p027580.2|organism=Theobroma cacao|type=polypeptide|length=1122bp
MSSSRPSHSSSNSGRSRHSARIIAQTTVDAKLHANFEESGSSFDYSSSVR
ASGDQQSRSDRVTTAYLHQIQKGKFIQPFGCLLALDEKTYKVIAYSENAP
EMLTMVSHAVPSVGDHPVLGIGTDIKTIFTAPSSSALLKALGIGEVSLLN
PILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLA
AKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVS
EITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVFQDD
KLAFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVIVNDGDEEGDGPD
SAQPQQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIEL
ENQIIEKNILRTQTLLCDMLLRDAPMGIISQSPNIMDLVKCDGAALLYKN
KIWKLGVTPSDFQLHEIASWLSEYHMDSTGLSTDSLYDAGFPGALALGDV
VCGMAAVRITLKDMLFWFRSHTAAEIRWGGAKHEPGEKDDGRKMHPRSSF
KAFLQVVKTRSMPWKDYEMDAIHSLQLILRNAFKDVETTDTNTSAIHSKL
SDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNMKIAELTG
LPVDKAIGKHLLSLVEDSSVETVKQMLVLALQGKEEKNIQFEIKTHGSRI
EAGPISLVVNACANRDLHENVVGVCFVAQDITGQKIVMDKFTRIEGDYKA
IVQNPNPLIPPIFGMDEFGWCSEWNPAMTKLTGWKRDEVVDKMLLGEVFG
THIACCRLKSQESFVNLGVVLNNAMTGHEPEKVPFGFFARSGKYVECLLC
VNKKLDREDAVTGVFCFLQLASHELQQALHVQRLSEQTAMKRLKALAYLK
RQIRNPLSGIIFSRKMMEGTELGPEQKRLLQTSTLCQRQLSKILDDSDLD
SIIDGYLDLEMIDFTLHEVLVASISQVMMKSNGKGIRIVNDTEEEVMTET
LYGDSVRLQQVLADFLLISVNFTPNGGQLVVVASLTKDQLGQSVHLAHLE
LRITHAGGGVPEALLSQMFGSDGDASEEGISLLISRKLVKLMNGDIQYLR
EAGRSTFIVTVELAAANRSRT* back to top
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