Tc05v2_t017100.2

Overview
NameTc05v2_t017100.2
Unique NameTc05v2_t017100.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1287
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
ProductALBINO3-like protein 2, chloroplastic, transcript variant X2
NoteALBINO3-like protein 3, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599434
GenbankXM_018122050.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g017100Tc05v2_g017100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p017100.2Tc05v2_p017100.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto288013auto288013Theobroma cacaoexon
exon-auto288014auto288014Theobroma cacaoexon
exon-auto288015auto288015Theobroma cacaoexon
exon-auto288016auto288016Theobroma cacaoexon
exon-auto288017auto288017Theobroma cacaoexon
exon-auto288018auto288018Theobroma cacaoexon
exon-auto288019auto288019Theobroma cacaoexon
exon-auto288020auto288020Theobroma cacaoexon
exon-auto288021auto288021Theobroma cacaoexon
exon-auto288022auto288022Theobroma cacaoexon
exon-auto288023auto288023Theobroma cacaoexon
exon-auto288024auto288024Theobroma cacaoexon
exon-auto288025auto288025Theobroma cacaoexon
exon-auto288026auto288026Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto288027auto288027Theobroma cacaoCDS
CDS-auto288028auto288028Theobroma cacaoCDS
CDS-auto288029auto288029Theobroma cacaoCDS
CDS-auto288030auto288030Theobroma cacaoCDS
CDS-auto288031auto288031Theobroma cacaoCDS
CDS-auto288032auto288032Theobroma cacaoCDS
CDS-auto288033auto288033Theobroma cacaoCDS
CDS-auto288034auto288034Theobroma cacaoCDS
CDS-auto288035auto288035Theobroma cacaoCDS
CDS-auto288036auto288036Theobroma cacaoCDS
CDS-auto288037auto288037Theobroma cacaoCDS
CDS-auto288038auto288038Theobroma cacaoCDS
CDS-auto288039auto288039Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t017100.2 ID=Tc05v2_t017100.2|Name=Tc05v2_t017100.2|organism=Theobroma cacao|type=mRNA|length=1287bp
ATGGCGACTTCCATGATCCTACTTTCCCACCTCCGTCCTTCCGGTCGTCT
CTCCACTCTCTCTCTCGCGCGTGTCTCTCACCTCCCTTCCCTCCCGGCAC
CTCTATCTCACCCCTACTTTTCGCCGTGCCTCTGTCCATTCGCCCCTTCC
ATCGCTCGATCCTTCTTTTCTTCGGCCGATAACGTTGAAGAATCAATCCT
TCCGGTTCGTGCGATCGTTTCGTTGCTTGATGGTTACCATAATCTCACTG
GCTTCCCTTGGTGGATTACTATTGCAACTGCCACTGTGGGTATGCGATTT
GCATTGTTGCCAGCAGTTATTATTCATCTTCAGAAGTTGAAAAGGATTGG
AGAGTTAGGTCCTAAATTGCCTTCTCCATTGCCATCAACTATGTCAGGAA
GAAGTTACATAGACCAAATTTTACATTTCCGGAAGGAAAGAAAGGCAATT
GGATGCCCTTCATTTTTATGGTTTCTTGCTCCCTTCTTCACTCAGGTCCC
GTGCCTTCTTTTATGGGTGACCAGCATTCGCAGAATGTCATTGGATAATC
ATCCTGGGTTTGATAGTGGTGGTGCATTATGGTTCCAAAATTTAACTGAA
CTTCCTCACGGTGTTTTAGGCCCTATCTTTCCGTTTCTGATTGCTAGTTT
GCACTACATCAATGTTCAGATTTCTTTTGGGACATCTTCAGTTAAGAAAG
CTGATCCGCTCTTGGCGAAAGTTTACAAGTTCTATTTGGATTTTCTGACA
TTGCCCTTTTTTGGTATCGGTTTCTTGATTCCCCAGGGAAGTCTAGTCTA
CTGGGTTACCAATAGTTCACTAAGTCTTATTCAGCAATTAACCCTCAAAC
ACCCTGCTGTTCGTGCAAAGTTGGGCTTACCAGATAAGGATGCTCTTGCA
ACAGTTGAAAATTCTGAAGAAAGTAGTACAGCAGGAACACCATCTGTGGA
GCCACCCTCAAAGCAACGCAGAATTGCTGTTCAAAACTTAAGTCCTAAAG
AACTGCTTGCACTTTCAATCAAACACTTGTCACGAGAGGAAAAAGATCTA
GCAATTTCATTGCTAAAATTGGCCCTTGACAAAGATCCTGAACATGTAAA
AGCTATGGTTGTCATGGGGCAGACTCTAATGCAAAAGGGACTGCTGGTGG
AGGCTAGTGAATATTTAGAGCATGCCATTTCAAAGCTCTCTCTCTCTGGC
CATCTGACAGAAGTTGAGGATGTTGATCATTTAATTCTATCATCTCAATG
GGCTGGTGTTGTCTATATGAAACAGGCTTGCCCATGA
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protein sequence of Tc05v2_p017100.2

>Tc05v2_p017100.2 ID=Tc05v2_p017100.2|Name=Tc05v2_p017100.2|organism=Theobroma cacao|type=polypeptide|length=429bp
MATSMILLSHLRPSGRLSTLSLARVSHLPSLPAPLSHPYFSPCLCPFAPS
IARSFFSSADNVEESILPVRAIVSLLDGYHNLTGFPWWITIATATVGMRF
ALLPAVIIHLQKLKRIGELGPKLPSPLPSTMSGRSYIDQILHFRKERKAI
GCPSFLWFLAPFFTQVPCLLLWVTSIRRMSLDNHPGFDSGGALWFQNLTE
LPHGVLGPIFPFLIASLHYINVQISFGTSSVKKADPLLAKVYKFYLDFLT
LPFFGIGFLIPQGSLVYWVTNSSLSLIQQLTLKHPAVRAKLGLPDKDALA
TVENSEESSTAGTPSVEPPSKQRRIAVQNLSPKELLALSIKHLSREEKDL
AISLLKLALDKDPEHVKAMVVMGQTLMQKGLLVEASEYLEHAISKLSLSG
HLTEVEDVDHLILSSQWAGVVYMKQACP*
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