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Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 2 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns |
Product | transcription factor PIF1, transcript variant X2 |
Note | Putative Transcription factor PIF1 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc01v2_t019300.1 ID=Tc01v2_t019300.1|Name=Tc01v2_t019300.1|organism=Theobroma cacao|type=mRNA|length=1680bp ATGAATCACTGCGTTCCCGATTTCGAAATGGGAGACGATTATTCAATCCC TTCTTCTTCTAGCTTAACTCGCTCCAAAAAACCTCCCATGCCAGAGGATG AAATCATGGAGCTGTTATGGCAAAACGGTCAAGTTGTTGTGCAGAGTCAA AACCAAAGATCTTTCAAGAAATCACCGCCGTTCAAATTCCACGACGCCGA TCAATCAGCTCCGAAGGAGATCCGATCATCTCCATCTCATCATCAACATC ATCAGCAACAGCAGCAACAATCGGTTACCGATCATCTCTTCATGCAAGAA GATGAAATGGCTTCATGGCTTCACTATCCTCTCAACGACGCCAACTTCGA CCACGATTTCTGCGCTGATCTCCTCTATCCTTCTTCTTCCGCCGCCGCCG CCGCTAATCCTTGCGTCACCTCCACCGCCACCGCCGCTCCTCCTCCACTC GGAAGAGTTTCTCAAGTTTCGGCTTCGGCGGCGGCGTCAGCTCCTCGGCC GCCGATACCACCGGCGAGGAGGAATGAGTTGGAGTCGACGAGGATCCAGA ACTTCGTTCACTTCTCGAGGCATAAAACAGCGAGGGTGGAGCAATCTGGA CCGTCTAATTCGAAGAGTGTAGTGAGGGAATCGACGGTCGTTGACTCGAG CGAGACTCCGGCGATGGCCCCCGATTCGAGAGGCTCTCAGGCTGTGCCTA GCAACACCGAGGCAGCATCTGGCGGGAACAACAACAATGCATCCGCCACC GTGAGCGCCGCTGCAGTTGCCAGCACGCAATCAGCTGGCGTCAGTGTAGA TGCCACCAAAGACAATTTGGCCACGTGCGAGGTCACAGTAACGTCATCTC CTGGCGGCTCCAGTGCCAGCGCGGAGCCGGCGACTCAGAAGGCTGCGCCG GCTGAGGACCGGAAGCGTAAAGGAAGAGAACCGGACGACGCCGAATGTCA CAGCGAGGATGCTGAGTTTGAATCCGCTGACACAAAGAAACAAACACGTG GATCCACATCTACAAAAAGGTCTCGTGCTGCGGAGGTCCATAACCTCTCA GAGAGGAGGCGCAGAGATAGGATAAATGAAAAGATGAGGGCTTTGCAAGA ACTTATACCTCGTTGCAACAAGTCAGACAAAGCTTCAATGCTGGATGAAG CAATTGAATACCTGAAGTCACTTCAGTTGCAAGTTCAGATGATGTCCATG GGTTGTGGCATGGTCCCAGTGATGTTTCCTGGAGTTCAGCAGTACATGCC AACAATGGGAATGGGAATTGGGATGGGCATGGGCATGGGCATGGATATGG GAATAAGTCGGCCAATGATGCCATTTCCCAATGTTTTGGCCGGTTCAGCA TTACCAACACCAGCTGCTGCAGCTCATTTGGGTCCAAGGTTTCCTCTGCC AGCCTTTCATATGCCACTACCAGTTCCAGCTCCTGATCCATCAAGAATCC AACCAAACAATCAGTCAGAAGCCATGCTAAACACGCTTGGCATGCAAAAT CCAACCCAGCCGCGGGCCCCAAATTTTGCTGATCCTTATCAGCAATATCT TGGTCTTCAACAGATGCAATTACCCCCACTCCAGAGTCAAGGAATGGCCC AGCCAAGTTCCCGTAAACCAAGTAGCAGTAGGGGAGCTGAGAATCTTAAA AATCACCCATCTGGTGACATGACACGGTAG back to topprotein sequence of Tc01v2_p019300.1 >Tc01v2_p019300.1 ID=Tc01v2_p019300.1|Name=Tc01v2_p019300.1|organism=Theobroma cacao|type=polypeptide|length=560bp
MNHCVPDFEMGDDYSIPSSSSLTRSKKPPMPEDEIMELLWQNGQVVVQSQ NQRSFKKSPPFKFHDADQSAPKEIRSSPSHHQHHQQQQQQSVTDHLFMQE DEMASWLHYPLNDANFDHDFCADLLYPSSSAAAAANPCVTSTATAAPPPL GRVSQVSASAAASAPRPPIPPARRNELESTRIQNFVHFSRHKTARVEQSG PSNSKSVVRESTVVDSSETPAMAPDSRGSQAVPSNTEAASGGNNNNASAT VSAAAVASTQSAGVSVDATKDNLATCEVTVTSSPGGSSASAEPATQKAAP AEDRKRKGREPDDAECHSEDAEFESADTKKQTRGSTSTKRSRAAEVHNLS ERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSM GCGMVPVMFPGVQQYMPTMGMGIGMGMGMGMDMGISRPMMPFPNVLAGSA LPTPAAAAHLGPRFPLPAFHMPLPVPAPDPSRIQPNNQSEAMLNTLGMQN PTQPRAPNFADPYQQYLGLQQMQLPPLQSQGMAQPSSRKPSSSRGAENLK NHPSGDMTR* back to top
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