Tc09v2_t025740.5

Overview
NameTc09v2_t025740.5
Unique NameTc09v2_t025740.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length4035
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH11, transcript variant X2
NoteDExH-box ATP-dependent RNA helicase DExH11
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590552
GenbankXM_018127717.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g025740Tc09v2_g025740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p025740.5Tc09v2_p025740.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto475271auto475271Theobroma cacaoexon
exon-auto475272auto475272Theobroma cacaoexon
exon-auto475273auto475273Theobroma cacaoexon
exon-auto475274auto475274Theobroma cacaoexon
exon-auto475275auto475275Theobroma cacaoexon
exon-auto475276auto475276Theobroma cacaoexon
exon-auto475277auto475277Theobroma cacaoexon
exon-auto475278auto475278Theobroma cacaoexon
exon-auto475279auto475279Theobroma cacaoexon
exon-auto475280auto475280Theobroma cacaoexon
exon-auto475281auto475281Theobroma cacaoexon
exon-auto475282auto475282Theobroma cacaoexon
exon-auto475283auto475283Theobroma cacaoexon
exon-auto475284auto475284Theobroma cacaoexon
exon-auto475285auto475285Theobroma cacaoexon
exon-auto475286auto475286Theobroma cacaoexon
exon-auto475287auto475287Theobroma cacaoexon
exon-auto475288auto475288Theobroma cacaoexon
exon-auto475289auto475289Theobroma cacaoexon
exon-auto475290auto475290Theobroma cacaoexon
exon-auto475291auto475291Theobroma cacaoexon
exon-auto475292auto475292Theobroma cacaoexon
exon-auto475293auto475293Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto475294auto475294Theobroma cacaoCDS
CDS-auto475295auto475295Theobroma cacaoCDS
CDS-auto475296auto475296Theobroma cacaoCDS
CDS-auto475297auto475297Theobroma cacaoCDS
CDS-auto475298auto475298Theobroma cacaoCDS
CDS-auto475299auto475299Theobroma cacaoCDS
CDS-auto475300auto475300Theobroma cacaoCDS
CDS-auto475301auto475301Theobroma cacaoCDS
CDS-auto475302auto475302Theobroma cacaoCDS
CDS-auto475303auto475303Theobroma cacaoCDS
CDS-auto475304auto475304Theobroma cacaoCDS
CDS-auto475305auto475305Theobroma cacaoCDS
CDS-auto475306auto475306Theobroma cacaoCDS
CDS-auto475307auto475307Theobroma cacaoCDS
CDS-auto475308auto475308Theobroma cacaoCDS
CDS-auto475309auto475309Theobroma cacaoCDS
CDS-auto475310auto475310Theobroma cacaoCDS
CDS-auto475311auto475311Theobroma cacaoCDS
CDS-auto475312auto475312Theobroma cacaoCDS
CDS-auto475313auto475313Theobroma cacaoCDS
CDS-auto475314auto475314Theobroma cacaoCDS
CDS-auto475315auto475315Theobroma cacaoCDS
CDS-auto475316auto475316Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t025740.5 ID=Tc09v2_t025740.5|Name=Tc09v2_t025740.5|organism=Theobroma cacao|type=mRNA|length=4035bp
ATGAAACCGATCCAAGCAGCAAACGGATTCAGTTTCCGAGTCGGATTCTC
CGGCCACAGCGGCCACCTCAGAGTCGAGCCTCTCTACACCGAGGAGCGCG
ATAACCCTATTAAAACTCTCCCCGACTTTGTTCTCCCACCTGCATTTCCC
AGGGAAACACCGGAATCGATTAAGGAACATATAAAGGAGAAATATCTTTT
GCCAAGATTGGACGATGAAGCTTTTTCTCCAGAAAAAGCTGGAAGGCAAT
GGGATTTTGACTGGTTTGAAAGGGTAAAAATACCATTGGAGCCATCATTG
CCAAGAACTGTTATGGTTCCAGTCTGGGAGTTACCCTTCAGACGGTGCAA
AGGGGGATCAGTTGAAGGAAAGTGGGAACCTAATTCATTGCAGGTGGATG
TATCAGAACTAATAGTTGGGGGTCAAGCTTCTGGTTCTTTTCCACACACG
GTTGGTGGTGCTGCCAAGGATTTTGTAAGAGGAAGCATTAATAACCGACC
TTTTCGTCCAGGAGGCTTGGAGGATCAATCTGTAGAGAGGATTCTTCCGG
ATGGTGCATGTAATGGTGAGTGGGTTAGTGAGGTGCTAAATGGTGGTCCT
GTTCAAACAATTCCTCCAGGCTTTAAGCAAGGGTTAAACCTTGGTGATCT
TACGGCACATCCTTGCTTATGGAATGTTTACAAGGACCGAATTTCACTCA
ATAACACATCAGTTGAAAAGAGTGAGTTGTCTGTACAATTTGACGACTTG
TTCAAGAAAGCTTGGGAAGAGGATGTTACAGAATTTGAGAAAGATGGGCA
TTCAACAGAATCAGATTCTGTTAAGTCAGAAGCTGAGGCGAACCAGGCTG
ATGTTCTCAACAGTCTTGATACTGGATCATCTGCTTTGGATGAAATTTTA
TCAGTTGAAGCAGAAAGATTAGATGAGAAAAGTGATGGGGGTGGTCAGCA
ACAAAAGGAGGCTTGGGCTGTTAGTGGAGGTAGTGAAGGGATTGCTGATC
ACTTTTACGAACTAGTTCCTGACATGGCAATTGAATATCCTTTTGAATTG
GATACATTCCAGAAGGAGGCTATTTATTATTTGGAAAAGGGGGAGTCTGT
TTTTGTGGCGGCTCATACATCTGCTGGAAAAACAGTTGTTGCAGAATATG
CATTTGCTTTGGCGTCAAAACATTGCACTAGAGCTGTGTATACAGCTCCA
ATTAAAACAATCAGCAATCAGAAGTATAGAGATTTCTGTGGGAAATTTGA
TGTTGGTCTTCTTACTGGTGATGTTAGTTTGAGACCTGAGGCTTCTTGTC
TCATCATGACGACTGAAATATTAAGGTCAATGCTTTATCGGGGTGCGGAT
ATTATTCGCGATATTGAATGGGTTATATTTGATGAGGTGCACTACGTGAA
TGATGTTGAAAGAGGCGTGGTTTGGGAAGAGGTCATAATCATGCTTCCAA
AACATATTAACATCATCCTCCTTTCAGCCACGGTGCCGAATACAATTGAA
TTTGCTGATTGGATTGGTCGGACGAAGCAAAAAAAAATTCGTGTCACTGG
GACAACAAAAAGACCAGTCCCACTGGAGCATTGCCTGTTTTATTCTGGAG
AACTTTACAAAATATGTGAAAGTGAAACTTTTATATCATTGGGACTAAAG
GCTGCCAAAGATGCATACAAGAAAAAGAATTCCAATGCAATTAGTGGTGG
TACTGCTTCGTATACTGGTTCTTCTGCAGTTCATGATGGGGCTCGAGGTC
AGAAACGTGAAATTTCTAACCGAGGGAAACAAAATAAGCATTCTGGTCCA
CAAAATTTGGGGCACTATTCTGGGACAGGTTGGGGGAATCAAGGCAGTGG
AGGTGGCCAGAATAGTTGGGGATCTAGGAGATCAGCATGGTTGATGCTTA
TTGACAAGCTTTCAAAGCAGTCACTATTACCTGTGGTTATATTTGGTTTC
TCAAAGAACCAATGTGATAAATCAGCTGACAGCATCTCTGGGACTGACCT
CACTAGTAGTTCTGAGAAAAGTGAGATCCGTGTTTTTTGTGATAAAGCTT
TTTCACGGCTTAAGGGATCTGATCGCAATTTACCTCAGGTTGTCAGAGTT
CAGAACCTTCTTTGCAGAGGAATTGGTGTGCATCATGCAGGTTTGCTTCC
AATTGTCAAGGAAGTTGTTGAAATGCTCTTCTGTCGAGGTGTGATTAAGG
TTTTGTTTTCAACAGAGACATTTGCCATGGGTGTTAATGCTCCAGCCAGA
ACGGTTGTCTTTGATACATTAAGGAAGTTTGATGGCAAGGAATTTAGACA
GTTACTCCCTGGGGAATACACTCAAATGGCAGGTCGTGCTGGCAGAAGAG
GACTTGATAAAACTGGTACAGTTATTGTGATGTGCCGTGATGAAATCCCA
GAAGAGAGGGATTTGAAACATGTTATAACTGGAACTCCAACTAATCTCGA
ATCTCAGTTCCGATTGACATACATTATGATCCTACATCTTCTTCGTGTGG
AAGAACTGAAGGTGGAGGACATGTTGAAACGGAGTTTTTCTGAATTTCAT
GCTCAGAAGAAACTTCCAGAGCAGCAACAACGTCTATTGCGAAAGCTTGC
ACAGCCAAAGAAAACTATAGAATGTATTAAAGGTGAACCTGCAATTGAAG
AGTACTATGAGATGCATGCAGAAGCCGAGGAACACTACCGACAGATATCA
AATGCTGTCATGCAGTCTCCTGTTGCCCAACAATTTCTTACTGTTGGGAG
AGTGGTTGTGGTGAAATCTCAGTCAGCCCACGACCATTTACTTGGAGTTG
TCGTAAAATCACCTTCTGCCAATAACAAACAATATATTGTGCAAGTTCTT
AAACCTGATGTGCCATTAATGACTCAAACTCCCTCAAGCAGCAGTAACTT
GCAAGATAAGAGAAGTGCTGACTTCCAACAAGGTTATGTGCTGCTACCAA
AAGCTAAACGTGGTCTCGAAGAAGACTACCGCTTATCTACTGGTCCACGC
AAAGGATCAGGTATCATCAACATAAAACTGCCTCACCATGGTGCTGCTGC
AGGAGTGAGTTTTGAGGTCAGAGAAACTGATAATACAGAATTCTTATGCA
TATGCAATAGCAAGATAAAAGTCGAGCAAGTTGGGATTCTTGAATATGGT
AGCGATACTGCTTTCTCTAACGCAGTTCAGCAGCTGTTGAAATTGAAATC
TAATGGAAACAAATATCCTCCAGCCTTAGATCCAATTAAAGATCTCAAAT
TGAAAGACATGGATCTTGTTCAAAAATACTACAAGTGGACCCACCTACTG
CAAAAAATGTCAGAGAACAAATGCCACGAATGTATTAAGTTGGAGGAGCA
CATTAAGCTAGCTAGAGAGATTAAGAAGCATAAAGATGAAGTTAATGCTC
TTGAATTTCAATTGTCTAATGAAGCGCTCCAACAGATGCCAGAATTTCAG
GGCCGGATTGATGTTCTGAAGGAAATTGGTTGTATAGATGAAGACCATGT
GGTTCAATTAAAAGGTCGTGTTGCCTGTGAGATGAATTCAGGGGAGGAAT
TGATATGCACAGAATGTTTATTTGAGAATCAACTAGATGACCTGGAACCT
GAAGAAGCGGTGGCTTTAATGTCGGCCTTCGTCTTTCAGCAGAAGAACAC
TTCTGAACCTTCTCTTACATCAAAACTCTCTCAGGCCAAAAAAAGATTGT
ATGACACAGCTATAAAACTTGGTAATCTTCAAGCAGGGTTCAAATTACAA
ATAACACCTGAGGAGTATGCGAAAGAAAATCTCAAGTTTGGTCTTGTTGA
AGTGGTGTACGAATGGGCAAAGGGAACTCCATTTGCAGAAATTTGTGAGC
TCACGGATGTTCCTGAAGGCCTTATAGTGCGGACAATTGTCAGGCTGGAC
GAGACTTGTCGTGAATTTAAAAGTGCTGCAGCTATAATGGGTAATTCATC
ACTTTATAAGAAAATGGAATCTGCTTCCAATGCCATAAAGCGTGATATCG
TCTTTGCTGCTAGTTTGTACATTACAGGAGTGTGA
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protein sequence of Tc09v2_p025740.5

>Tc09v2_p025740.5 ID=Tc09v2_p025740.5|Name=Tc09v2_p025740.5|organism=Theobroma cacao|type=polypeptide|length=1345bp
MKPIQAANGFSFRVGFSGHSGHLRVEPLYTEERDNPIKTLPDFVLPPAFP
RETPESIKEHIKEKYLLPRLDDEAFSPEKAGRQWDFDWFERVKIPLEPSL
PRTVMVPVWELPFRRCKGGSVEGKWEPNSLQVDVSELIVGGQASGSFPHT
VGGAAKDFVRGSINNRPFRPGGLEDQSVERILPDGACNGEWVSEVLNGGP
VQTIPPGFKQGLNLGDLTAHPCLWNVYKDRISLNNTSVEKSELSVQFDDL
FKKAWEEDVTEFEKDGHSTESDSVKSEAEANQADVLNSLDTGSSALDEIL
SVEAERLDEKSDGGGQQQKEAWAVSGGSEGIADHFYELVPDMAIEYPFEL
DTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAP
IKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGAD
IIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPKHINIILLSATVPNTIE
FADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKICESETFISLGLK
AAKDAYKKKNSNAISGGTASYTGSSAVHDGARGQKREISNRGKQNKHSGP
QNLGHYSGTGWGNQGSGGGQNSWGSRRSAWLMLIDKLSKQSLLPVVIFGF
SKNQCDKSADSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRV
QNLLCRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPAR
TVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVIVMCRDEIP
EERDLKHVITGTPTNLESQFRLTYIMILHLLRVEELKVEDMLKRSFSEFH
AQKKLPEQQQRLLRKLAQPKKTIECIKGEPAIEEYYEMHAEAEEHYRQIS
NAVMQSPVAQQFLTVGRVVVVKSQSAHDHLLGVVVKSPSANNKQYIVQVL
KPDVPLMTQTPSSSSNLQDKRSADFQQGYVLLPKAKRGLEEDYRLSTGPR
KGSGIINIKLPHHGAAAGVSFEVRETDNTEFLCICNSKIKVEQVGILEYG
SDTAFSNAVQQLLKLKSNGNKYPPALDPIKDLKLKDMDLVQKYYKWTHLL
QKMSENKCHECIKLEEHIKLAREIKKHKDEVNALEFQLSNEALQQMPEFQ
GRIDVLKEIGCIDEDHVVQLKGRVACEMNSGEELICTECLFENQLDDLEP
EEAVALMSAFVFQQKNTSEPSLTSKLSQAKKRLYDTAIKLGNLQAGFKLQ
ITPEEYAKENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLD
ETCREFKSAAAIMGNSSLYKKMESASNAIKRDIVFAASLYITGV*
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