Tc06v2_t012300.3

Overview
NameTc06v2_t012300.3
Unique NameTc06v2_t012300.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length675
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcalcyclin-binding protein, transcript variant X1
NoteSGS domain-containing protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596499
GenbankXM_007025010.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g012300Tc06v2_g012300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p012300.3Tc06v2_p012300.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto337807auto337807Theobroma cacaoexon
exon-auto337808auto337808Theobroma cacaoexon
exon-auto337809auto337809Theobroma cacaoexon
exon-auto337810auto337810Theobroma cacaoexon
exon-auto337811auto337811Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto337812auto337812Theobroma cacaoCDS
CDS-auto337813auto337813Theobroma cacaoCDS
CDS-auto337814auto337814Theobroma cacaoCDS
CDS-auto337815auto337815Theobroma cacaoCDS
CDS-auto337816auto337816Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t012300.3 ID=Tc06v2_t012300.3|Name=Tc06v2_t012300.3|organism=Theobroma cacao|type=mRNA|length=675bp
ATGGCGGAGGAATTGGCGCTTGATTTAGAGGAGCTTAGGCAACTCCAAAG
CATCGCAAAGAGGCCACGTATTCTATCTCTTCTTTCCTCCGAAATTCGCA
ACTTGGAAAAGTTGCAGACATCAAACGAGGTTGCAAAGGCACCTACTCCT
GCTACTGTTTCACAAATTCCAACTCCCATATCAACTTCAGGTAAGGTTCC
TGTTAACCCAGCATTGAGTTATGTAACGCTCGCCTCGTTCAGCTGGGATC
AGGATAATGATAAAGTCAAGATATATGTCTCTCTAGAAGGAGTTAACCAG
GAAAAAATTCAGACAGAGTTCAAGCCAATGTCATTTGATGTTAAATTTCA
TGACGTCCAAGGAAAGAACTATCGATGTGCCATTCCGAAATTGAATAAAG
ACATTGTACCAGAAAAGTGCAAGGTGTTAGTCAAGCCTACAAGAGTCGTC
ATCACATTGTTCAAAGCTTCCAAAGGGAACTGGTCTGATCTGCACTACAA
GGAGGACAAGCTGAAGCCAAATTTGGATAAAGAACGAGATCCCATGGCTG
GAATCATGGACTTAATGAAGAATATGTATGAGGACGGTGATGATGACATG
AAGAGAACAATTGCCAAAGCATGGACTGATGCAAGGTCTGGCAAAACAGC
AGACCCTCTGAAAGGTTACCGGTGA
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protein sequence of Tc06v2_p012300.3

>Tc06v2_p012300.3 ID=Tc06v2_p012300.3|Name=Tc06v2_p012300.3|organism=Theobroma cacao|type=polypeptide|length=225bp
MAEELALDLEELRQLQSIAKRPRILSLLSSEIRNLEKLQTSNEVAKAPTP
ATVSQIPTPISTSGKVPVNPALSYVTLASFSWDQDNDKVKIYVSLEGVNQ
EKIQTEFKPMSFDVKFHDVQGKNYRCAIPKLNKDIVPEKCKVLVKPTRVV
ITLFKASKGNWSDLHYKEDKLKPNLDKERDPMAGIMDLMKNMYEDGDDDM
KRTIAKAWTDARSGKTADPLKGYR*
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