Tc05v2_t010120.5

Overview
NameTc05v2_t010120.5
Unique NameTc05v2_t010120.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length996
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 89 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Producttranscription factor HBP-1b(c1), transcript variant X5
NoteTranscription factor HBP-1b(c1) (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598521
GenbankXM_018121784.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g010120Tc05v2_g010120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p010120.5Tc05v2_p010120.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto273190auto273190Theobroma cacaoexon
exon-auto273191auto273191Theobroma cacaoexon
exon-auto273192auto273192Theobroma cacaoexon
exon-auto273193auto273193Theobroma cacaoexon
exon-auto273194auto273194Theobroma cacaoexon
exon-auto273195auto273195Theobroma cacaoexon
exon-auto273196auto273196Theobroma cacaoexon
exon-auto273197auto273197Theobroma cacaoexon
exon-auto273198auto273198Theobroma cacaoexon
exon-auto273199auto273199Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto273200auto273200Theobroma cacaoCDS
CDS-auto273201auto273201Theobroma cacaoCDS
CDS-auto273202auto273202Theobroma cacaoCDS
CDS-auto273203auto273203Theobroma cacaoCDS
CDS-auto273204auto273204Theobroma cacaoCDS
CDS-auto273205auto273205Theobroma cacaoCDS
CDS-auto273206auto273206Theobroma cacaoCDS
CDS-auto273207auto273207Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t010120.5 ID=Tc05v2_t010120.5|Name=Tc05v2_t010120.5|organism=Theobroma cacao|type=mRNA|length=996bp
ATGGCAGATGCCAGTCCTAGAACTGATATTTCAACAGATGACACTGATGA
GAAAAATCAAAGGTTTGAAAGAGGTCAAACAAATGCTATTGTGGCCTCTG
ATTCTAGCGACAGATCAAAAGATAAAACAGATCAGAAGACATTGCGTAGG
CTTGCGCAAAATCGTGAGGCTGCAAGAAAGAGCCGGTTAAGGAAAAAGGC
ATATGTGCAGCAGCTTGAGAGTAGCCGACTGAAACTGACTCAACTTGAGC
AAGAGCTGCAGAGAGCTCGTCAGCAGGGCATATTTATTTCAAGCTCAGGA
GATCAATCCCATTCAATGAGTGGAAATGGTGCCCTGGCATTTGATGTTGA
GTATGCACGGTGGCTGGAGGAGCACAATAGGCAGATAAATGAGTTAAGGG
CTGCAGTCAATTCACATGCTGGTGACACCGAACTTCGCACCATTGTTGAC
AACGTCACAGCACATTTTGATGACATTTTCAGGTTGAAAGGCATTGCTGC
AAAAGCTGATGTTTTCCATATCTTATCAGGAATGTGGAAAACACCTGCAG
AGCGGTGTTTTCTGTGGATTGGTGGCTTCCGCTCATCTGAGCTTCTTAAG
CTTCTTGCGAATCAATTGGAGCCTTTAACTGAGCAACAGTTTATGGGTTT
CCACAACTTGCAGCAATCATCCCAACAGGCTGAAGATGCTTTGTCACAAG
GGATGGAAGCATTGCAACAATCTTTGGCTGAGACGTTGGCCAATGGCTCA
CCTGGTCCCTCCGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAAT
GGCGATGGCCATGGGAAAGCTAGGGACCCTTGAGGGGTTCGTTCGTCAGG
CTGATAATCTGCGTCAGCAAACACTGCAACAAATGCACCGTATCTTGACA
ACTAGGCAATCAGCTCGTGCCCTTCTTGCAATAAATGACTATTTTTCTAG
GCTTCGAGCTCTCAGTTCTCTTTGGCTGGCCCGGCCACGCGAGTGA
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protein sequence of Tc05v2_p010120.5

>Tc05v2_p010120.5 ID=Tc05v2_p010120.5|Name=Tc05v2_p010120.5|organism=Theobroma cacao|type=polypeptide|length=332bp
MADASPRTDISTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTDQKTLRR
LAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSG
DQSHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGDTELRTIVD
NVTAHFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLK
LLANQLEPLTEQQFMGFHNLQQSSQQAEDALSQGMEALQQSLAETLANGS
PGPSGSSGNVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILT
TRQSARALLAINDYFSRLRALSSLWLARPRE*
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