Tc05v2_t010120.3

Overview
NameTc05v2_t010120.3
Unique NameTc05v2_t010120.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1398
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 95 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttranscription factor HBP-1b(c1), transcript variant X3
NoteTGACG-sequence-specific DNA-binding protein TGA-2.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598521
GenbankXM_018121782.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g010120Tc05v2_g010120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p010120.3Tc05v2_p010120.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto273140auto273140Theobroma cacaoexon
exon-auto273141auto273141Theobroma cacaoexon
exon-auto273142auto273142Theobroma cacaoexon
exon-auto273143auto273143Theobroma cacaoexon
exon-auto273144auto273144Theobroma cacaoexon
exon-auto273145auto273145Theobroma cacaoexon
exon-auto273146auto273146Theobroma cacaoexon
exon-auto273147auto273147Theobroma cacaoexon
exon-auto273148auto273148Theobroma cacaoexon
exon-auto273149auto273149Theobroma cacaoexon
exon-auto273150auto273150Theobroma cacaoexon
exon-auto273151auto273151Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto273152auto273152Theobroma cacaoCDS
CDS-auto273153auto273153Theobroma cacaoCDS
CDS-auto273154auto273154Theobroma cacaoCDS
CDS-auto273155auto273155Theobroma cacaoCDS
CDS-auto273156auto273156Theobroma cacaoCDS
CDS-auto273157auto273157Theobroma cacaoCDS
CDS-auto273158auto273158Theobroma cacaoCDS
CDS-auto273159auto273159Theobroma cacaoCDS
CDS-auto273160auto273160Theobroma cacaoCDS
CDS-auto273161auto273161Theobroma cacaoCDS
CDS-auto273162auto273162Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t010120.3 ID=Tc05v2_t010120.3|Name=Tc05v2_t010120.3|organism=Theobroma cacao|type=mRNA|length=1398bp
ATGGGCAGTAGAACAGTGAATATTGGTATAGGAAATGATAAGAAAGCTGT
AACAGCGATGCCAAGCTACGTTCCTTCAGTACCCACTTCCAATCCCAGCA
GCACAGAGGCAAACACCATTCGTTCTTCTCGAATACCAGACTTAGGAACC
CTTGAGCAATCTCTTGGATTTCGCATTGAGGATGCTGTTGATCTTACCAG
AAATCCTCTATTTAATCAAATAAAGTCAAGTACCCAGGCGATAGCTGATG
CTCAATTTGGTGCTATAAATAAGACACTTGCATCTGCAGACAACAACCTC
TCTGCTGCCATTGTGGGGTCACAAACATTAACGCTTAAAAAAGATACCCC
ACCTAATCTTGTATCCATATCAGCTGGTCGGGAGAATTGGGGGGATTCCA
ATATGGCAGATGCCAGTCCTAGAACTGATATTTCAACAGATGACACTGAT
GAGAAAAATCAAAGGTTTGAAAGAGGTCAAACAAATGCTATTGTGGCCTC
TGATTCTAGCGACAGATCAAAAGATAAAACAGATCAGAAGACATTGCGTA
GGCTTGCGCAAAATCGTGAGGCTGCAAGAAAGAGCCGGTTAAGGAAAAAG
GCATATGTGCAGCAGCTTGAGAGTAGCCGACTGAAACTGACTCAACTTGA
GCAAGAGCTGCAGAGAGCTCGTCAGCAGGGCATATTTATTTCAAGCTCAG
GAGATCAATCCCATTCAATGAGTGGAAATGGTGCCCTGGCATTTGATGTT
GAGTATGCACGGTGGCTGGAGGAGCACAATAGGCAGATAAATGAGTTAAG
GGCTGCAGTCAATTCACATGCTGGTGACACCGAACTTCGCACCATTGTTG
ACAACGTCACAGCACATTTTGATGACATTTTCAGGTTGAAAGGCATTGCT
GCAAAAGCTGATGTTTTCCATATCTTATCAGGAATGTGGAAAACACCTGC
AGAGCGGTGTTTTCTGTGGATTGGTGGCTTCCGCTCATCTGAGCTTCTTA
AGCTTCTTGCGAATCAATTGGAGCCTTTAACTGAGCAACAGTTTATGGGT
TTCCACAACTTGCAGCAATCATCCCAACAGGCTGAAGATGCTTTGTCACA
AGGGATGGAAGCATTGCAACAATCTTTGGCTGAGACGTTGGCCAATGGCT
CACCTGGTCCCTCCGGATCATCTGGGAATGTGGCAAATTATATGGGTCAA
ATGGCGATGGCCATGGGAAAGCTAGGGACCCTTGAGGGGTTCGTTCGTCA
GGCTGATAATCTGCGTCAGCAAACACTGCAACAAATGCACCGTATCTTGA
CAACTAGGCAATCAGCTCGTGCCCTTCTTGCAATAAATGACTATTTTTCT
AGGCTTCGAGCTCTCAGTTCTCTTTGGCTGGCCCGGCCACGCGAGTGA
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protein sequence of Tc05v2_p010120.3

>Tc05v2_p010120.3 ID=Tc05v2_p010120.3|Name=Tc05v2_p010120.3|organism=Theobroma cacao|type=polypeptide|length=466bp
MGSRTVNIGIGNDKKAVTAMPSYVPSVPTSNPSSTEANTIRSSRIPDLGT
LEQSLGFRIEDAVDLTRNPLFNQIKSSTQAIADAQFGAINKTLASADNNL
SAAIVGSQTLTLKKDTPPNLVSISAGRENWGDSNMADASPRTDISTDDTD
EKNQRFERGQTNAIVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKK
AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDV
EYARWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAHFDDIFRLKGIA
AKADVFHILSGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFMG
FHNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGPSGSSGNVANYMGQ
MAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFS
RLRALSSLWLARPRE*
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