Tc05v2_t010120.2

Overview
NameTc05v2_t010120.2
Unique NameTc05v2_t010120.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1395
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 91 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Producttranscription factor HBP-1b(c1), transcript variant X4
NoteTGACG-sequence-specific DNA-binding protein TGA-2.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598521
GenbankXM_018121783.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g010120Tc05v2_g010120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p010120.2Tc05v2_p010120.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto273115auto273115Theobroma cacaoexon
exon-auto273116auto273116Theobroma cacaoexon
exon-auto273117auto273117Theobroma cacaoexon
exon-auto273118auto273118Theobroma cacaoexon
exon-auto273119auto273119Theobroma cacaoexon
exon-auto273120auto273120Theobroma cacaoexon
exon-auto273121auto273121Theobroma cacaoexon
exon-auto273122auto273122Theobroma cacaoexon
exon-auto273123auto273123Theobroma cacaoexon
exon-auto273124auto273124Theobroma cacaoexon
exon-auto273125auto273125Theobroma cacaoexon
exon-auto273126auto273126Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto273127auto273127Theobroma cacaoCDS
CDS-auto273128auto273128Theobroma cacaoCDS
CDS-auto273129auto273129Theobroma cacaoCDS
CDS-auto273130auto273130Theobroma cacaoCDS
CDS-auto273131auto273131Theobroma cacaoCDS
CDS-auto273132auto273132Theobroma cacaoCDS
CDS-auto273133auto273133Theobroma cacaoCDS
CDS-auto273134auto273134Theobroma cacaoCDS
CDS-auto273135auto273135Theobroma cacaoCDS
CDS-auto273136auto273136Theobroma cacaoCDS
CDS-auto273137auto273137Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t010120.2 ID=Tc05v2_t010120.2|Name=Tc05v2_t010120.2|organism=Theobroma cacao|type=mRNA|length=1395bp
ATGGGCAGTAGAACAGTGAATATTGGTATAGGAAATGATAAGAAAGCTGT
AACAGCGATGCCAAGCTACGTTCCTTCAGTACCCACTTCCAATCCCAGCA
CAGAGGCAAACACCATTCGTTCTTCTCGAATACCAGACTTAGGAACCCTT
GAGCAATCTCTTGGATTTCGCATTGAGGATGCTGTTGATCTTACCAGAAA
TCCTCTATTTAATCAAATAAAGTCAAGTACCCAGGCGATAGCTGATGCTC
AATTTGGTGCTATAAATAAGACACTTGCATCTGCAGACAACAACCTCTCT
GCTGCCATTGTGGGGTCACAAACATTAACGCTTAAAAAAGATACCCCACC
TAATCTTGTATCCATATCAGCTGGTCGGGAGAATTGGGGGGATTCCAATA
TGGCAGATGCCAGTCCTAGAACTGATATTTCAACAGATGACACTGATGAG
AAAAATCAAAGGTTTGAAAGAGGTCAAACAAATGCTATTGTGGCCTCTGA
TTCTAGCGACAGATCAAAAGATAAAACAGATCAGAAGACATTGCGTAGGC
TTGCGCAAAATCGTGAGGCTGCAAGAAAGAGCCGGTTAAGGAAAAAGGCA
TATGTGCAGCAGCTTGAGAGTAGCCGACTGAAACTGACTCAACTTGAGCA
AGAGCTGCAGAGAGCTCGTCAGCAGGGCATATTTATTTCAAGCTCAGGAG
ATCAATCCCATTCAATGAGTGGAAATGGTGCCCTGGCATTTGATGTTGAG
TATGCACGGTGGCTGGAGGAGCACAATAGGCAGATAAATGAGTTAAGGGC
TGCAGTCAATTCACATGCTGGTGACACCGAACTTCGCACCATTGTTGACA
ACGTCACAGCACATTTTGATGACATTTTCAGGTTGAAAGGCATTGCTGCA
AAAGCTGATGTTTTCCATATCTTATCAGGAATGTGGAAAACACCTGCAGA
GCGGTGTTTTCTGTGGATTGGTGGCTTCCGCTCATCTGAGCTTCTTAAGC
TTCTTGCGAATCAATTGGAGCCTTTAACTGAGCAACAGTTTATGGGTTTC
CACAACTTGCAGCAATCATCCCAACAGGCTGAAGATGCTTTGTCACAAGG
GATGGAAGCATTGCAACAATCTTTGGCTGAGACGTTGGCCAATGGCTCAC
CTGGTCCCTCCGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAATG
GCGATGGCCATGGGAAAGCTAGGGACCCTTGAGGGGTTCGTTCGTCAGGC
TGATAATCTGCGTCAGCAAACACTGCAACAAATGCACCGTATCTTGACAA
CTAGGCAATCAGCTCGTGCCCTTCTTGCAATAAATGACTATTTTTCTAGG
CTTCGAGCTCTCAGTTCTCTTTGGCTGGCCCGGCCACGCGAGTGA
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protein sequence of Tc05v2_p010120.2

>Tc05v2_p010120.2 ID=Tc05v2_p010120.2|Name=Tc05v2_p010120.2|organism=Theobroma cacao|type=polypeptide|length=465bp
MGSRTVNIGIGNDKKAVTAMPSYVPSVPTSNPSTEANTIRSSRIPDLGTL
EQSLGFRIEDAVDLTRNPLFNQIKSSTQAIADAQFGAINKTLASADNNLS
AAIVGSQTLTLKKDTPPNLVSISAGRENWGDSNMADASPRTDISTDDTDE
KNQRFERGQTNAIVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKA
YVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVE
YARWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAHFDDIFRLKGIAA
KADVFHILSGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFMGF
HNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGPSGSSGNVANYMGQM
AMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSR
LRALSSLWLARPRE*
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