Tc04v2_t017550.3

Overview
NameTc04v2_t017550.3
Unique NameTc04v2_t017550.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1695
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productphosphatidylinositol N-acetylglucosaminyltransferase subunit Q, transcript variant X2
NoteN-acetylglucosaminyl transferase component family protein / Gpi1 family protein, putative isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602833
GenbankXM_018120332.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g017550Tc04v2_g017550Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p017550.3Tc04v2_p017550.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto234210auto234210Theobroma cacaoexon
exon-auto234211auto234211Theobroma cacaoexon
exon-auto234212auto234212Theobroma cacaoexon
exon-auto234213auto234213Theobroma cacaoexon
exon-auto234214auto234214Theobroma cacaoexon
exon-auto234215auto234215Theobroma cacaoexon
exon-auto234216auto234216Theobroma cacaoexon
exon-auto234217auto234217Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto234218auto234218Theobroma cacaoCDS
CDS-auto234219auto234219Theobroma cacaoCDS
CDS-auto234220auto234220Theobroma cacaoCDS
CDS-auto234221auto234221Theobroma cacaoCDS
CDS-auto234222auto234222Theobroma cacaoCDS
CDS-auto234223auto234223Theobroma cacaoCDS
CDS-auto234224auto234224Theobroma cacaoCDS
CDS-auto234225auto234225Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t017550.3 ID=Tc04v2_t017550.3|Name=Tc04v2_t017550.3|organism=Theobroma cacao|type=mRNA|length=1695bp
ATGCCAGGGATATTCGTTGGATTCCTAAATTGCATCGTATTCATTGGAAT
GGGGAAACAGTGGCTCGATGTGATGTCCACGTATGTTATAGTCTATGAAA
CTCCAACATATGGTGCACACCATTTTTCATTGAGATTCTGGAATTCTTCT
GACCATGGGAAAACTTCTCTTAAGAAGCCTCAGTGGGTTGATGAACTTCA
CCAAAAGCAGCCTTTAAATGACTTGGATACTGTCATTTTGGCAATCAACA
GTGCCGCTGCAGCTAAGAAATTTTTTGAGAAACATGATGGCGAGAGATCC
AGTGCTAATATTCCTATTATTTGGATGTTTTGTGCCTTAATGTGGCATTT
ATTGGCCATGTCAGTGGCATCATTGTCTACTTTTTTCTATATTTTTCTTC
AGTTTTCTCATAGTTTTTTGAATTTTGGACCACGATCATGGGTATGTGCT
GCATCAGCAAAGGCATTTAGCAATACCTGGATAAATATTCGAATTCGTTG
TTGCCAGATCTTATATTGGCCTATCTTTCTTCAGGACAATGATCTCAGGT
CTCAATCAAGCGTGGAATGTGCAGAAAAAGTTGCATTACATAAGCATTCC
ATGTGGTCTAGTTTGGTTGTTGATATCCTTTTGGGAAACTTGATTGGTTT
GGCACTCTTATTTCACGCAGAATCTGTCTGTTTGTGGGTTTCAAAGTTTG
CCAGTGACTTTACAAATGAGTTGCTGCGGTCGGGTTGTGTGTGGTTGATG
GGTGTCCCTGCCGGCTTCAAGTTGAACATAGAATTGGCTGGAGTTCTCGG
CATGATTTCTCTTAATATGATTCAAATTTGGTCTACCCTTTGGATGTTTG
TGGGTTCCCTCTTCATTTATTTCATCAAAGGACTTGCTATATCGGCAATT
ATTTTTGGGATGACAATACCAGCTGCTTTGGTCATAGACATGATTACGAT
CGCAACATTGCATGTGTCAACCCTTCATTGGTTAATCTCAATTCTCTATT
CACAGCAGTTACATGCACTAGCAGCTTTGTGGCGTCTTTTCAGGGGACGA
AAGTGGAATCCTCTTCGTCAAAGATTAGATAGCTTTGACTACACTGTGAA
ACAACATGTTGTTGGATCTCTTTTATTTACACCACTTTTGCTTCTTTTGC
CAACAACCTCTGTTTTCTATATTTTCTTCACTATTATGAACACAGCCATC
AGCCTTAGCTGTATGTGCATTGAAGTCATCATATCTGTTATCCATGCTAC
TCCTTATATTAAAATTGTTCTTCGGTTGATAAAACCAAGAAGATGTCCAT
CAGGGATATGGTTTGAAGTCATAGCCTGTCAAAGTAATAGCAGTGATTCT
CCATGGAGTACTTCTATTGATAAAACCAATTTGCCATTTGAAGAGGTGCC
ACAAAAAGAGGATAGAAATAGTATAATATCCAGTGTTTTGATTTCAATTC
TCCACAGCAATTATTTGAGCATCGGACACATGGTCTTACCTCACTATAGA
AAAGCTTATTCCGAAGTTTCTGGATCATATTTTGCCACATCAGTTCTTGG
TCTTCTTAGTGGTAACAAAATTGCATCTACTTTGGGAGCCACACTGCCCT
CAACAATGCCATGGTTGTTTATCCCACACAAAGAATATTGGTGCCTCTGT
CGTAATGTGATTCTTGCGTGCAATGTAGATTGCAACAATCATTGA
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protein sequence of Tc04v2_p017550.3

>Tc04v2_p017550.3 ID=Tc04v2_p017550.3|Name=Tc04v2_p017550.3|organism=Theobroma cacao|type=polypeptide|length=565bp
MPGIFVGFLNCIVFIGMGKQWLDVMSTYVIVYETPTYGAHHFSLRFWNSS
DHGKTSLKKPQWVDELHQKQPLNDLDTVILAINSAAAAKKFFEKHDGERS
SANIPIIWMFCALMWHLLAMSVASLSTFFYIFLQFSHSFLNFGPRSWVCA
ASAKAFSNTWINIRIRCCQILYWPIFLQDNDLRSQSSVECAEKVALHKHS
MWSSLVVDILLGNLIGLALLFHAESVCLWVSKFASDFTNELLRSGCVWLM
GVPAGFKLNIELAGVLGMISLNMIQIWSTLWMFVGSLFIYFIKGLAISAI
IFGMTIPAALVIDMITIATLHVSTLHWLISILYSQQLHALAALWRLFRGR
KWNPLRQRLDSFDYTVKQHVVGSLLFTPLLLLLPTTSVFYIFFTIMNTAI
SLSCMCIEVIISVIHATPYIKIVLRLIKPRRCPSGIWFEVIACQSNSSDS
PWSTSIDKTNLPFEEVPQKEDRNSIISSVLISILHSNYLSIGHMVLPHYR
KAYSEVSGSYFATSVLGLLSGNKIASTLGATLPSTMPWLFIPHKEYWCLC
RNVILACNVDCNNH*
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