Tc04v2_t017200.2

Overview
NameTc04v2_t017200.2
Unique NameTc04v2_t017200.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length612
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productinosine triphosphate pyrophosphatase, transcript variant X1
NoteInosine triphosphate pyrophosphatase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602796
GenbankXM_007034404.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g017200Tc04v2_g017200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p017200.2Tc04v2_p017200.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto233706auto233706Theobroma cacaoexon
exon-auto233707auto233707Theobroma cacaoexon
exon-auto233708auto233708Theobroma cacaoexon
exon-auto233709auto233709Theobroma cacaoexon
exon-auto233710auto233710Theobroma cacaoexon
exon-auto233711auto233711Theobroma cacaoexon
exon-auto233712auto233712Theobroma cacaoexon
exon-auto233713auto233713Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto233714auto233714Theobroma cacaoCDS
CDS-auto233715auto233715Theobroma cacaoCDS
CDS-auto233716auto233716Theobroma cacaoCDS
CDS-auto233717auto233717Theobroma cacaoCDS
CDS-auto233718auto233718Theobroma cacaoCDS
CDS-auto233719auto233719Theobroma cacaoCDS
CDS-auto233720auto233720Theobroma cacaoCDS
CDS-auto233721auto233721Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t017200.2 ID=Tc04v2_t017200.2|Name=Tc04v2_t017200.2|organism=Theobroma cacao|type=mRNA|length=612bp
ATGGAGGCGGCGGGGAGAGCAGTGTTGGTGTCACGGCCGGTGACGTTCGT
AACTGGAAATGCCAAGAAGTTGGAGGAAGTCAAGGCCATCTTGGGCCAAT
CGATTCCCTTTCAGTCCCTCAAGCTTGACCTGCCTGAACTGCAAGGCGAA
CCGGAAGAAATATCCAAAGAAAAGGCTCGTTTGGCTGCTGTCCAGGTGAA
TGGACCGGTGTTGGTGGAAGATACATGTCTTTGTTTCAATGCTCTAAAGG
GTCTTCCAGGGCCATACATCAAGTGGTTTCTGCAGAAGATTGGCCATGAA
GGTTTAAACAACTTGTTGATGGCATATGAGGATAAGTCAGCTTACGCATT
ATGTGCATTTTCTTTTGCCCTTGGACCTGATGTTGAACCTATTACCTTTC
TAGGGGAAACTCCGGGAAAAATAGTTCCTGCTAGGGGACCCAATGACTTT
GGATGGGATCCTATTTTTCAACCTGATGGCTATGACCAAACATATGCAGA
GATGCCGAAGGAAGAGAAGAACAAGATTTCTCACCGTTATAGGGCTCTTG
CTATGGTGAAATCCCACTTTGCTGAAGCTGGATACAGTTTTAGTACTCCA
TCTAAAGAGTGA
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protein sequence of Tc04v2_p017200.2

>Tc04v2_p017200.2 ID=Tc04v2_p017200.2|Name=Tc04v2_p017200.2|organism=Theobroma cacao|type=polypeptide|length=204bp
MEAAGRAVLVSRPVTFVTGNAKKLEEVKAILGQSIPFQSLKLDLPELQGE
PEEISKEKARLAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKIGHE
GLNNLLMAYEDKSAYALCAFSFALGPDVEPITFLGETPGKIVPARGPNDF
GWDPIFQPDGYDQTYAEMPKEEKNKISHRYRALAMVKSHFAEAGYSFSTP
SKE*
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