Tc02v2_t013590.7

Overview
NameTc02v2_t013590.7
Unique NameTc02v2_t013590.7
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2097
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productnucleolin 2, transcript variant X4
NoteNucleolin like 2 isoform 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608509
GenbankXM_007043247.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013590Tc02v2_g013590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013590.7Tc02v2_p013590.7Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto106659auto106659Theobroma cacaoexon
exon-auto106660auto106660Theobroma cacaoexon
exon-auto106661auto106661Theobroma cacaoexon
exon-auto106662auto106662Theobroma cacaoexon
exon-auto106663auto106663Theobroma cacaoexon
exon-auto106664auto106664Theobroma cacaoexon
exon-auto106665auto106665Theobroma cacaoexon
exon-auto106666auto106666Theobroma cacaoexon
exon-auto106667auto106667Theobroma cacaoexon
exon-auto106668auto106668Theobroma cacaoexon
exon-auto106669auto106669Theobroma cacaoexon
exon-auto106670auto106670Theobroma cacaoexon
exon-auto106671auto106671Theobroma cacaoexon
exon-auto106672auto106672Theobroma cacaoexon
exon-auto106673auto106673Theobroma cacaoexon
exon-auto106674auto106674Theobroma cacaoexon
exon-auto106675auto106675Theobroma cacaoexon
exon-auto106676auto106676Theobroma cacaoexon
exon-auto106677auto106677Theobroma cacaoexon
exon-auto106678auto106678Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto106679auto106679Theobroma cacaoCDS
CDS-auto106680auto106680Theobroma cacaoCDS
CDS-auto106681auto106681Theobroma cacaoCDS
CDS-auto106682auto106682Theobroma cacaoCDS
CDS-auto106683auto106683Theobroma cacaoCDS
CDS-auto106684auto106684Theobroma cacaoCDS
CDS-auto106685auto106685Theobroma cacaoCDS
CDS-auto106686auto106686Theobroma cacaoCDS
CDS-auto106687auto106687Theobroma cacaoCDS
CDS-auto106688auto106688Theobroma cacaoCDS
CDS-auto106689auto106689Theobroma cacaoCDS
CDS-auto106690auto106690Theobroma cacaoCDS
CDS-auto106691auto106691Theobroma cacaoCDS
CDS-auto106692auto106692Theobroma cacaoCDS
CDS-auto106693auto106693Theobroma cacaoCDS
CDS-auto106694auto106694Theobroma cacaoCDS
CDS-auto106695auto106695Theobroma cacaoCDS
CDS-auto106696auto106696Theobroma cacaoCDS
CDS-auto106697auto106697Theobroma cacaoCDS
CDS-auto106698auto106698Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013590.7 ID=Tc02v2_t013590.7|Name=Tc02v2_t013590.7|organism=Theobroma cacao|type=mRNA|length=2097bp
ATGGGAAAGTCAAGCAAGAAATCAACCCCCAAAGTTGAAGCAGCTCGTGA
TGTAGCTCCTCTTAAGTCTGGAAAGAAAGGCAAGAGAGAAGCTGAAGAAA
CTCCTGAAAAACAAGTGGTTGTGAAAAGACAGAAGAAAAACGATGGAGTA
GCACAGGCTATCGTAAAGGAGAAAGTTGAAGCAAAAACCCAGAAGAAGAA
GAAAGATGAAACCAGCAGTTCTTCGGATGACTCTTCTGATTCTGAGGATG
AACCTGTACCACAAAAGAAGCAGCCAGCTATTGTCAAGAATGGCTCTGTA
CCAGCAAAGAAAGCAAAACAAGCTAGCAGTTCAGATTCTTCTGAGTCTAG
TAGTGAGGAAGATTCATCCTCTGATGAAGAAGCAACTGCTCAGAAGAAAA
AACCAGTAGTTGCTAAAAATAGCTCTGTTCCAGCTGCTAAGGCAGTGAAA
ACCGAGAGTTCTGATTCATCTTCTGATGATGATTCTGATTCGGATGATGA
GCCTGCTGTAAAAACAAAGGTATCAGCAGCCGTTAAAAATGGCTCTGCAC
CTGTTAAGAAAGGAAAGGCCTCAAGCAGTTCAGATTCTTCAGATGAAGAT
AGTAGCTCGGATGAAGATGATGAAAAATCAAAGCCTGCCTCTAAGAAAGG
ACCTACCACTGTTCCCAAAAAGGGGTCAAGTGATAGTTCGGAAAGTGACA
GCTCTTCAGATGAGGATGTAAAGAAAGCAACTGTGGTGAAGCAAGTGTCT
GCTCCTACCCCAAAGAAAACAGAGAAATCCAGTAGTAGCTCTTCTGATGA
TAGTGATTCTGAGGAAGAAGAGCAGGAAAATGAAGCTAAAGGTGATAAGA
AACCTGTTACTGGCAAAACAGCTAAGAAAGAAGAGTCATCTAAAAGTTCA
TCAGACACTGATTCCTCTGAGGATGAGGCTCCTTTGAACAAAGTTCCTGT
TGCTTCAAAAAGATCTCTCCCTACAGCTGGGGCAAAACAATCAAAACAGG
AAAGTGATGATAGTGATGATGATGATAGTGATGATGAAAGTGAGGATGAA
CAACCTGCAGCCAAAAAGTCAAAGGTTGCTTCAGATAGTGGAAAAGATGC
TAAAGTTGTCAAAAAAGTAAGCAGTGATGAAGAGGAGGGGTCTGAAGAAT
CATCTGATGAAGATGAGGAAAGTGATGATGAAGAAGAAACACCAAAGAAA
AAAGATACTGATGGTGAAATGGTGGATGCTACAACCCCACAGAAAATTAC
CAAGCAGCAGGATTTTAAGTCTGCTAAGAAAGCTCCCCAAACTCCTGCAA
CGCCTCAAGGTCAACCTACAGGATCAAAGACCTTGTTTGTTGGAAACCTA
CCTTATCAAGTTGAACAAGCTGATGTAAAGAATTTCTTTAAAGATGCTGG
TGAGATTGTGGATATACGTTTTGCTACTGATGCTGAAGGGAACTTTAAGG
GATTTGGACATGTTGAATTTGCTACAGCAGAGGCTGCACAGAAGGCTTTG
GAATTGAATGGTGAATATTTGATGAATCGTTCTCTTAGACTTGATTTGGC
CCGTGAAAGGGGTGCATACACACCGTACAGTGGCAATGGGAACAATTCAT
TCCAGAAAGGTGGAAGAAGTCAGACTCAAACAATTTTTGTCAAGGGGTTT
GATCAATCTCTTGGTGAAGATGAGATTAGGAGTTCTTTGGAAGAGCACTT
TGGTTCTTGTGGAGAGATTTCTAGGGTGGCCATTCCAGTAGATCGGGAGA
CTGGTGGTGTGAAAGGTTATGCTTACTTGGATTTCAACGATGGTGATAGT
TTCAACAAAGCTTTAGAACTTGATGGATCTGAACTAAGCAATTATTCCTT
GTCTGTGGATGAGGCAAAACCAAGAGGTGAATTCCGTGATGGTCCAGGCA
GTGGAAGAGGTGGTGGCAGGAGTGGTGGAAGGAGTGGGGGATGGAGTGGG
GGAAGGGATGGTGGTGGCCGTGGTGGTCGTGGTGGTCGGCGTGGGGGTGG
TCGATTTGGTGGTGCTGGCAGAGGTCGTGGACCTAATAAGCCAAACCTTG
CTGCTGCTGGCACGGGAAGGAAGACAACTTTCAATGATGAGGATTAG
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protein sequence of Tc02v2_p013590.7

>Tc02v2_p013590.7 ID=Tc02v2_p013590.7|Name=Tc02v2_p013590.7|organism=Theobroma cacao|type=polypeptide|length=699bp
MGKSSKKSTPKVEAARDVAPLKSGKKGKREAEETPEKQVVVKRQKKNDGV
AQAIVKEKVEAKTQKKKKDETSSSSDDSSDSEDEPVPQKKQPAIVKNGSV
PAKKAKQASSSDSSESSSEEDSSSDEEATAQKKKPVVAKNSSVPAAKAVK
TESSDSSSDDDSDSDDEPAVKTKVSAAVKNGSAPVKKGKASSSSDSSDED
SSSDEDDEKSKPASKKGPTTVPKKGSSDSSESDSSSDEDVKKATVVKQVS
APTPKKTEKSSSSSSDDSDSEEEEQENEAKGDKKPVTGKTAKKEESSKSS
SDTDSSEDEAPLNKVPVASKRSLPTAGAKQSKQESDDSDDDDSDDESEDE
QPAAKKSKVASDSGKDAKVVKKVSSDEEEGSEESSDEDEESDDEEETPKK
KDTDGEMVDATTPQKITKQQDFKSAKKAPQTPATPQGQPTGSKTLFVGNL
PYQVEQADVKNFFKDAGEIVDIRFATDAEGNFKGFGHVEFATAEAAQKAL
ELNGEYLMNRSLRLDLARERGAYTPYSGNGNNSFQKGGRSQTQTIFVKGF
DQSLGEDEIRSSLEEHFGSCGEISRVAIPVDRETGGVKGYAYLDFNDGDS
FNKALELDGSELSNYSLSVDEAKPRGEFRDGPGSGRGGGRSGGRSGGWSG
GRDGGGRGGRGGRRGGGRFGGAGRGRGPNKPNLAAAGTGRKTTFNDED*
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