Tc01v2_t027200.1

Overview
NameTc01v2_t027200.1
Unique NameTc01v2_t027200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3075
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productprotein translocase subunit SECA1, chloroplastic
NoteProtein translocase subunit SECA1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613810
GenbankXM_018122749.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027200Tc01v2_g027200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027200.1Tc01v2_p027200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto61668auto61668Theobroma cacaoexon
exon-auto61669auto61669Theobroma cacaoexon
exon-auto61670auto61670Theobroma cacaoexon
exon-auto61671auto61671Theobroma cacaoexon
exon-auto61672auto61672Theobroma cacaoexon
exon-auto61673auto61673Theobroma cacaoexon
exon-auto61674auto61674Theobroma cacaoexon
exon-auto61675auto61675Theobroma cacaoexon
exon-auto61676auto61676Theobroma cacaoexon
exon-auto61677auto61677Theobroma cacaoexon
exon-auto61678auto61678Theobroma cacaoexon
exon-auto61679auto61679Theobroma cacaoexon
exon-auto61680auto61680Theobroma cacaoexon
exon-auto61681auto61681Theobroma cacaoexon
exon-auto61682auto61682Theobroma cacaoexon
exon-auto61683auto61683Theobroma cacaoexon
exon-auto61684auto61684Theobroma cacaoexon
exon-auto61685auto61685Theobroma cacaoexon
exon-auto61686auto61686Theobroma cacaoexon
exon-auto61687auto61687Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto61688auto61688Theobroma cacaoCDS
CDS-auto61689auto61689Theobroma cacaoCDS
CDS-auto61690auto61690Theobroma cacaoCDS
CDS-auto61691auto61691Theobroma cacaoCDS
CDS-auto61692auto61692Theobroma cacaoCDS
CDS-auto61693auto61693Theobroma cacaoCDS
CDS-auto61694auto61694Theobroma cacaoCDS
CDS-auto61695auto61695Theobroma cacaoCDS
CDS-auto61696auto61696Theobroma cacaoCDS
CDS-auto61697auto61697Theobroma cacaoCDS
CDS-auto61698auto61698Theobroma cacaoCDS
CDS-auto61699auto61699Theobroma cacaoCDS
CDS-auto61700auto61700Theobroma cacaoCDS
CDS-auto61701auto61701Theobroma cacaoCDS
CDS-auto61702auto61702Theobroma cacaoCDS
CDS-auto61703auto61703Theobroma cacaoCDS
CDS-auto61704auto61704Theobroma cacaoCDS
CDS-auto61705auto61705Theobroma cacaoCDS
CDS-auto61706auto61706Theobroma cacaoCDS
CDS-auto61707auto61707Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027200.1 ID=Tc01v2_t027200.1|Name=Tc01v2_t027200.1|organism=Theobroma cacao|type=mRNA|length=3075bp
ATGGCAGCACCCTTCTTCGACTCCACTCTGGTAAACCACCACTCGCCCTC
TGTTTCACCATTTGCTTCCAAATTTATCTTCAACTACAGAAACAAAAACT
ACCCTCCAATTCTCCATGCGGGTTCCTCGTTCTTTACTGGGAAGTCCCTT
AGAGTGGCTGAACTTGGAGCGGGAACACCTAGATTGGGAAGTTGGAGGAG
GCGGAGGATGGGTGTTAGGGCTTCATTGGGAGGTCTTTTGGGTGGGATTT
TCAAAGGTAATGATACTGGAGAGTCCACCAGGCAGCAATACGCGGGGACT
GTGACGGCTATTAACAGATTGGAATCGGAGATGGCTGCGTTAACTGATGC
AGAGCTGAGGGAAAAGACTTTTGCTTTGAAGGAACGTGCCTCTCAAGGCG
AATCTTTGGACTCTCTTTTGCCTGAGGCATTTGCTGTTGTAAGAGAGGCC
TCCAAGAGGGTCCTTGGCCTCCGTCCCTTTGATGTCCAACTGATAGGTGG
CATGGTTCTTCATAAGGGAGAAATAGCTGAAATGAGAACTGGAGAAGGAA
AGACCCTTGTTGCTGTCTTACCAGCTTATTTGAATGCATTAAGTGGGAAA
GGAGTTCATGTGGTTACCGTCAATGATTATCTGGCCAGACGTGATTGTGA
GTGGGTTGGTCAAGTTCCTCGCTTTCTTGGGTTGAAGGTTGGACTAATAC
AACAGAACATGACAAGTGAACAGAGAAGGGAAAATTACTTGTGTGACATC
ACTTATGTCACCAATAGTGAGCTAGGTTTTGATTACTTGAGAGACAATCT
TGCCACGAGTGTTGAGGAGCTTGTTTTGAGGGATTTCAATTATTGTATCA
TAGATGAGGTCGATTCCATCCTTATTGATGAAGCAAGAACACCTCTTATC
ATATCTGGGACTGCCGAAAAACCTAGTGATCAGTATTATAAAGCAGCAAA
AATAGCTGCTGCCTTTGAACGAGATATACATTATACCGTAGATGAGAAGC
AGAAAACTGTTCTTCTTACAGAACAGGGTTATGAAGATGCTGAAGAAATT
CTGGATGTGAAAGATTTGTATGATCCACGGGAACAATGGGCATCTTTTGT
TTTGAATGCTATTAAAGCAAAGGAATTGTTTCTTAGAGATGTAAATTATA
TTATCCGTGGCCAGGAGGTGCTTATTGTAGATGAATTTACTGGTCGAGTT
ATGCAGGGGAGGCGATGGAGTGATGGACTTCATCAAGCAGTTGAAGCAAA
AGAGGGTTTACCTATTCAAAATGAAACTATAACTCTGGCCTCAATCAGTT
ACCAGAACTTTTTTCTCCAGTTTCCAAAACTTTGTGGAATGACTGGCACT
GCAGCAACTGAAAGCACAGAATTTGAGAGCATATACAAGCTTAAAGTTAC
GATTGTCCCCACAAACAAGCCCATGATTAGAAAGGATGAGTCTGATGTAG
TTTTCAGAGCAACTAATGGAAAATGGCAGGCCGTTGTTGTAGAAATTTCT
AGAATGAATAAGACAGGTTGTCCAGTACTTGTTGGCACAACAAGTGTTGA
GCAAAGTGACTCATTGTCAGAGCAATTGCAAGAAGCAGGAATTTCCCATG
AGGTTCTCAATGCGAAACCAGAGAATGTAGAAAGAGAAGCAGAGATTGTA
GCACAGAGCGGTCGTCTAGGGGCAGTGACTATTGCTACCAATATGGCTGG
TCGTGGAACAGACATAATCCTTGGTGGCAATGCAGAATTTATGGCCAGGC
TGAAGCTACGTGAGATGCTAATGCCAAGAGTTGTTAAGCCAGCTGAGGGA
GTCTTTGTCTCAGTGAAGAAACCTCCTCCTATGAAGACATGGAAGGTGAA
TGAGAAGTTATTCCCTTGCAAGCTATCCAGCAAGAATTCCAAGTTAGCCG
AGGAAGCTGTAGAGTTGGCTGTCAAAACTTGGGGCAAGAAATCTTTAAGT
GAGCTGGAAGCTGAGGAGCGCCTGTCTTATTCTTGTGAAAAGGGCCCTGC
TGAGGATGAAGTTATTGCCAAGCTGCGAAGTGCGTTTTTAGAAATTGTAA
AGGAATATAAGGCCTACACTGAGGAAGAGAGGAAGCAGGTTGTGGCAGCA
GGTGGGCTTCATGTGGTGGGGACAGAACGTCATGAGTCACGGCGAATAGA
CAATCAGCTGCGTGGCCGAAGTGGCAGGCAAGGGGATCCTGGAAGTTCTC
GCTTTTTTCTTAGTCTAGAAGATAACATCTTTCGTATTTTTGGGGGAGAC
AGAATTCAGGGCTTGATGAGAGCTTTCAGAGTTGAAGACCTACCAATTGA
ATCCAAGATGTTGACTAAAGCACTTGATGAAGCTCAGCGCAAAGTGGAAA
ACTACTTTTTTGATATTCGTAAACAATTGTTTGAGTATGATGAGGTCTTG
AACAGTCAAAGGGACCGTGTCTATACAGAGAGAAGACGGGCCCTTATGTC
CGACAATCTGCAATCTCTTATTATTGAATATGCTGAATTGACAATGGATG
ACATCTTAGAGGCGAATATTGGTCCGGATGCTTCAAAGGAAAGCTGGGAT
CTTGAAAAGCTCATTGCAAAACTTCAACAGTACTGCTACCTGTTGAATGA
TCTGACCCCAGATGTATTGAGGAGCCAGTGTTCAAGTTATGAGGAATTAC
AGGATTACCTTCGTCTTCGTGGTCGTGAAGCATATTTGCAGAAAAGGGAT
ACCATGGAGAAGCAAGCAGAAGGGTTGATGAAGGAAGCTGAAAGATTCTT
AATTTTGAGCAATATTGATCGCCTGTGGAAAGAACATTTGCAAGCTCTCA
AGTTTGTACAACAAGCCGTAGGCTTACGTGGATATGCTCAGCGTGATCCA
CTGATCGAGTATAAGCTTGAAGGCTATAATCTCTTCTTGGATATGATGGC
ACAGATAAGACGAAATGTAATATATTCAATATATCAGTTCCAACCAGTGA
TGGTAAAGAAGGATCAGGAGAAGTCGGATAAAGTTGTTACAAATGGTAGT
AGTAATCAGAGACCTAAACCAGTTGGTGCAGTTGAGTCATCTTCGTCAGC
TGCGAGCCCCCAAGCCAGCGCCTAA
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protein sequence of Tc01v2_p027200.1

>Tc01v2_p027200.1 ID=Tc01v2_p027200.1|Name=Tc01v2_p027200.1|organism=Theobroma cacao|type=polypeptide|length=1025bp
MAAPFFDSTLVNHHSPSVSPFASKFIFNYRNKNYPPILHAGSSFFTGKSL
RVAELGAGTPRLGSWRRRRMGVRASLGGLLGGIFKGNDTGESTRQQYAGT
VTAINRLESEMAALTDAELREKTFALKERASQGESLDSLLPEAFAVVREA
SKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAVLPAYLNALSGK
GVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTSEQRRENYLCDI
TYVTNSELGFDYLRDNLATSVEELVLRDFNYCIIDEVDSILIDEARTPLI
ISGTAEKPSDQYYKAAKIAAAFERDIHYTVDEKQKTVLLTEQGYEDAEEI
LDVKDLYDPREQWASFVLNAIKAKELFLRDVNYIIRGQEVLIVDEFTGRV
MQGRRWSDGLHQAVEAKEGLPIQNETITLASISYQNFFLQFPKLCGMTGT
AATESTEFESIYKLKVTIVPTNKPMIRKDESDVVFRATNGKWQAVVVEIS
RMNKTGCPVLVGTTSVEQSDSLSEQLQEAGISHEVLNAKPENVEREAEIV
AQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRVVKPAEG
VFVSVKKPPPMKTWKVNEKLFPCKLSSKNSKLAEEAVELAVKTWGKKSLS
ELEAEERLSYSCEKGPAEDEVIAKLRSAFLEIVKEYKAYTEEERKQVVAA
GGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGD
RIQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEYDEVL
NSQRDRVYTERRRALMSDNLQSLIIEYAELTMDDILEANIGPDASKESWD
LEKLIAKLQQYCYLLNDLTPDVLRSQCSSYEELQDYLRLRGREAYLQKRD
TMEKQAEGLMKEAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDP
LIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKSDKVVTNGS
SNQRPKPVGAVESSSSAASPQASA*
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