Tc01v2_t015930.1

Overview
NameTc01v2_t015930.1
Unique NameTc01v2_t015930.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1218
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productexopolygalacturonase
NotePolygalacturonase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612416
GenbankXM_018119194.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g015930Tc01v2_g015930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p015930.1Tc01v2_p015930.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto36541auto36541Theobroma cacaoexon
exon-auto36542auto36542Theobroma cacaoexon
exon-auto36543auto36543Theobroma cacaoexon
exon-auto36544auto36544Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto36545auto36545Theobroma cacaoCDS
CDS-auto36546auto36546Theobroma cacaoCDS
CDS-auto36547auto36547Theobroma cacaoCDS
CDS-auto36548auto36548Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t015930.1 ID=Tc01v2_t015930.1|Name=Tc01v2_t015930.1|organism=Theobroma cacao|type=mRNA|length=1218bp
ATGGCTGTACAGTTGAATATTGCAGTTCTATCAATATTATTACTTTTGTT
CAGTACTTCAATCCCTAAAGCCCAATCTACCGTTGTTGATGTAGTTGCCA
AGTATGGCGCAAAGGCTGACGAGAAGACGGATTTGAGCACTCCTTTGCTG
CATGCTTGGAAAGAAGCATGTGCATCGACAACCCCAAGTAAGATTGTAAT
TCCGAAAGGGACGTACAGATTAAGCCGAGCAACCCTGGATGGTCCTTGCA
AATCAGCTATTGAACTTCAGGTTAGTGGCACAATAAAGGCTCCGGCAGAT
CCTAGCGCTTTCAAGGACCCTAATTGGGTTGTCTTCAACCACGTTGATCA
TCTTACAATATCTGGCGGTGGAGTTTTTGATGGGCAAGGAGCCGCTGTTT
GGGGCAAGAACAATTGCGCTAAGAACAAATATTGCGCCGCACTTCCCATT
AATTTAAGGTTCAATTTCGTCAGCAACGCCATTGTACAAGGCATAACTAC
CAAGGACAGCAAACAGTTCCACGTTAATGTTTTGGGATGTAAAAACTTTA
CCTTCCAACATTTCACTGTCTCCGCTCCCGAAAACAGCATAAACACGGAT
GGAATCCACATTGGGCGATCCAATGGGGTCAAGATTCTTGACACAAACAT
TAAAACCGGTGATGATTGTGTCTCCTTGGGTGATGGTAGCAAGAATGTGA
TCGTCGAGAGAGTAACCTGCGGACCAGGACATGGCATCAGTGTGGGCAGT
CTTGGAAAGTTCAAGGGTGAAGAACCAGTGAGTGGAATTTTTATCAGGAA
TTGCACCATCAGTAATACAATGAATGGTGTTAGGGTCAAAACTTGGCCAG
ACTCCCATCCTGGCTCAGCAACAGATATGCATTTTGAGGATATTATCTTG
AATAATGTCGGCAATCCTATCCTTATTGATCAAGAATACTGCCCATGGAA
CCTATGCAATTTAAAGGTTCCATCGCGTGTTAAACTCAGCAACATTAGCT
TCAAGAAAATTTGGGGTACTTCTTCAACTCAGCAAGCTGTCAAGCTTGTT
TGCAGCCGCGGTTTGCCATGCGATCGTGTGGAACTCGCCGACATTGACAT
CACCTACAAAGGACCTGGAGGACCTGCAATATCCCAATGTATCAATGTGA
AACCCAGACTTTCTGGCAAACAGAACCCACCTGCCTGTTCCAGCCCTGCC
AGGCGTACCGGTGCTTAA
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protein sequence of Tc01v2_p015930.1

>Tc01v2_p015930.1 ID=Tc01v2_p015930.1|Name=Tc01v2_p015930.1|organism=Theobroma cacao|type=polypeptide|length=406bp
MAVQLNIAVLSILLLLFSTSIPKAQSTVVDVVAKYGAKADEKTDLSTPLL
HAWKEACASTTPSKIVIPKGTYRLSRATLDGPCKSAIELQVSGTIKAPAD
PSAFKDPNWVVFNHVDHLTISGGGVFDGQGAAVWGKNNCAKNKYCAALPI
NLRFNFVSNAIVQGITTKDSKQFHVNVLGCKNFTFQHFTVSAPENSINTD
GIHIGRSNGVKILDTNIKTGDDCVSLGDGSKNVIVERVTCGPGHGISVGS
LGKFKGEEPVSGIFIRNCTISNTMNGVRVKTWPDSHPGSATDMHFEDIIL
NNVGNPILIDQEYCPWNLCNLKVPSRVKLSNISFKKIWGTSSTQQAVKLV
CSRGLPCDRVELADIDITYKGPGGPAISQCINVKPRLSGKQNPPACSSPA
RRTGA*
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