Tc09v2_t029180.1

Overview
NameTc09v2_t029180.1
Unique NameTc09v2_t029180.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length354
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductSNF1-related protein kinase regulatory subunit beta-3, transcript variant X1
NoteSNF1-related protein kinase regulatory subunit beta-3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590934
GenbankXM_007016766.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g029180Tc09v2_g029180Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p029180.1Tc09v2_p029180.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto482621auto482621Theobroma cacaoexon
exon-auto482622auto482622Theobroma cacaoexon
exon-auto482623auto482623Theobroma cacaoexon
exon-auto482624auto482624Theobroma cacaoexon
exon-auto482625auto482625Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto482626auto482626Theobroma cacaoCDS
CDS-auto482627auto482627Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t029180.1 ID=Tc09v2_t029180.1|Name=Tc09v2_t029180.1|organism=Theobroma cacao|type=mRNA|length=354bp
ATGAACAACCAATTCGGTGAAGATCAAGATGAAGCAACTGTTATGGGGTT
TGAAGTACCAAAATCACCTGATTCAAGTTATAATAATGTGTACCCTGGGA
ATGAAGATGATGCACGTGACCCGCCAGTTGTCCCTGCACACCTGCATCGT
ACATTGCTTAGCTACCCCACAAGCATGAATGCTTCTGGGAATCTTCCTTT
GCCAGAAAATGTGATTCTAAATCATCTTTACATTGAAAACCGAGAGGCAC
CAAGATCTGTAGTGGCACTTGGGTTCACTCACCGCTTCCGTTCGAAGTAT
GTTACTGTTGTGCTATACAAACCAGTTCCAAGAAGGGGTAGTGCCAGTAC
GTAA
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protein sequence of Tc09v2_p029180.1

>Tc09v2_p029180.1 ID=Tc09v2_p029180.1|Name=Tc09v2_p029180.1|organism=Theobroma cacao|type=polypeptide|length=118bp
MNNQFGEDQDEATVMGFEVPKSPDSSYNNVYPGNEDDARDPPVVPAHLHR
TLLSYPTSMNASGNLPLPENVILNHLYIENREAPRSVVALGFTHRFRSKY
VTVVLYKPVPRRGSAST*
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