Tc08v2_t004410.1

Overview
NameTc08v2_t004410.1
Unique NameTc08v2_t004410.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1293
Properties
Property NameValue
NoteOrnithine decarboxylase
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productornithine decarboxylase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591633
GenbankXM_007017861.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g004410Tc08v2_g004410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p004410.1Tc08v2_p004410.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto391465auto391465Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto391466auto391466Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t004410.1 ID=Tc08v2_t004410.1|Name=Tc08v2_t004410.1|organism=Theobroma cacao|type=mRNA|length=1293bp
ATGCACTCTCTGATAGTTTCTCCTTTTCTCTCTCTCGATCAGTCTCGCAC
CATGGTGTCAAGCTCCAGGAGCCTCCAGGCAATCATAAGCGCAGGAGGGT
TGACGAGAAAGAGGGCTGCGGCCTTGACAGAAAATGAGTTGATCGCTTTC
ATTCAATCTGTCATTTCTGATGAACAGCAAACGGAACCATTTTACGTGCT
TGATTTGGGTGTTGTTGTGGATCTCTTTGACACGTGGATTCGTAATCTTC
CCATGGTTCAAGCATTCTACGCTGTCAAGTGCAACCCCAGCCCGGCTCTA
CTCCGAGAAATGGCCGCACTCGGCTCCAACTTCGATTGTGCAAGCCGTGC
TGAGATAGAAGCCATTCTGGCTTTAGGGGTTTCACCTGATCGAATTGTCT
TTGCAAACCCATGCAAAGCAGAGTCTCACATCAAGTATGCTGCTAGCGTT
GGCGTTAACCTAACTACTTTTGATTCAAAAGATGAACTTGAAAAGATTCG
AAAGTGGCACCCAGAGTGTGCCTTATTGATCCGAATCAAACCCCCCGAAA
CCAGTGGCGCAAGATTTCAATTAGGTGCTAAATTCGGTGCACTTCCTGAG
GAAGTTGTTCCTCTTCTCCAGGCTGCTCAAGCTGCAAAGTTCACTGTTCC
GGGCGTCTCCTTCCACATTGGTAGCGGAGCCACCCACTTCCGTGCATTTG
AAGAAGCCATAGCAGCAGCTAAAACAGTTTTTGAAAAAGCTGCTCATCTT
GGCATGCCGAATATGCATATACTAAACATCGGAGGGGGCTTCACAGCCGG
CCCACGGTTCACCGAAGCAGCACCCGTCGTGAAAACCGCTCTCCAAAAGT
ACTTTTTCAATGAGCCTGGCTTAAAAGTTATGGCGGAACCTGGTCTATTC
TTCGCCCAGTCGTCTTTCACGCTAGTAGCCAGCATTATCGGGAAGCGAGT
TAGGCATGAGCTTAGAGAGTATTGGATAAACGATGGGATCTACGGGTCCA
TGAACTTTTTGCTGTACGATCATGACGATGTGATCTTAACTCCTCTTGCA
TGCACATCCAACCGTGGCAACCCAACTTGCAAAGGGTTAAAGACATATGA
TTCCACCGTTTTCGGACCCACATGTGATGCCGTGGACACAGTTTTGAAAG
GTCACCCTCTGCCGGAACTGCAGGTGAATGACTGGCTGGTGTTTCACAAA
ATGGGCGCTTACACCTCGGCTTGTGGAACCAAGTTCAATGGGTTCGACAC
ATGTGCCATTTCCACTTACATTGCCTACTCCGATCAAAGTTGA
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protein sequence of Tc08v2_p004410.1

>Tc08v2_p004410.1 ID=Tc08v2_p004410.1|Name=Tc08v2_p004410.1|organism=Theobroma cacao|type=polypeptide|length=431bp
MHSLIVSPFLSLDQSRTMVSSSRSLQAIISAGGLTRKRAAALTENELIAF
IQSVISDEQQTEPFYVLDLGVVVDLFDTWIRNLPMVQAFYAVKCNPSPAL
LREMAALGSNFDCASRAEIEAILALGVSPDRIVFANPCKAESHIKYAASV
GVNLTTFDSKDELEKIRKWHPECALLIRIKPPETSGARFQLGAKFGALPE
EVVPLLQAAQAAKFTVPGVSFHIGSGATHFRAFEEAIAAAKTVFEKAAHL
GMPNMHILNIGGGFTAGPRFTEAAPVVKTALQKYFFNEPGLKVMAEPGLF
FAQSSFTLVASIIGKRVRHELREYWINDGIYGSMNFLLYDHDDVILTPLA
CTSNRGNPTCKGLKTYDSTVFGPTCDAVDTVLKGHPLPELQVNDWLVFHK
MGAYTSACGTKFNGFDTCAISTYIAYSDQS*
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