Tc06v2_t008340.1

Overview
NameTc06v2_t008340.1
Unique NameTc06v2_t008340.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length252
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productsecreted acidic protein 1A
NotePutative THO complex subunit 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596039
GenbankXM_018122822.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008340Tc06v2_g008340Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008340.1Tc06v2_p008340.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto328429auto328429Theobroma cacaoexon
exon-auto328430auto328430Theobroma cacaoexon
exon-auto328431auto328431Theobroma cacaoexon
exon-auto328432auto328432Theobroma cacaoexon
exon-auto328433auto328433Theobroma cacaoexon
exon-auto328434auto328434Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto328435auto328435Theobroma cacaoCDS
CDS-auto328436auto328436Theobroma cacaoCDS
CDS-auto328437auto328437Theobroma cacaoCDS
CDS-auto328438auto328438Theobroma cacaoCDS
CDS-auto328439auto328439Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008340.1 ID=Tc06v2_t008340.1|Name=Tc06v2_t008340.1|organism=Theobroma cacao|type=mRNA|length=252bp
ATGCAATGGAATCAAGACTCAGGCTTGGAGAAATTAGATATGTTCGAGAA
ATTTGAAAAGGGTTTTGAGGATCAAGACAAAGAAGGAAAGGAAAAGAAAG
GTGATGGAGAAGAAGACAATAGAGAGGAAGAACCAGGAGAACTGTCTGAT
GAATCATACAGTGATGATGGAGATTATAATGAGAATGAACATTTTGATGA
TGATGAAGATGATTATAACCAAGAAGATGGCAATGATGATGAACCTATAT
AG
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protein sequence of Tc06v2_p008340.1

>Tc06v2_p008340.1 ID=Tc06v2_p008340.1|Name=Tc06v2_p008340.1|organism=Theobroma cacao|type=polypeptide|length=84bp
MQWNQDSGLEKLDMFEKFEKGFEDQDKEGKEKKGDGEEDNREEEPGELSD
ESYSDDGDYNENEHFDDDEDDYNQEDGNDDEPI*
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