Tc05v2_t006050.2

Overview
NameTc05v2_t006050.2
Unique NameTc05v2_t006050.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length855
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductE3 ubiquitin-protein ligase MIEL1, transcript variant X1
NoteE3 ubiquitin-protein ligase MIEL1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598057
GenbankXM_007027403.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g006050Tc05v2_g006050Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p006050.2Tc05v2_p006050.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto265095auto265095Theobroma cacaoexon
exon-auto265096auto265096Theobroma cacaoexon
exon-auto265097auto265097Theobroma cacaoexon
exon-auto265098auto265098Theobroma cacaoexon
exon-auto265099auto265099Theobroma cacaoexon
exon-auto265100auto265100Theobroma cacaoexon
exon-auto265101auto265101Theobroma cacaoexon
exon-auto265102auto265102Theobroma cacaoexon
exon-auto265103auto265103Theobroma cacaoexon
exon-auto265104auto265104Theobroma cacaoexon
exon-auto265105auto265105Theobroma cacaoexon
exon-auto265106auto265106Theobroma cacaoexon
exon-auto265107auto265107Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto265108auto265108Theobroma cacaoCDS
CDS-auto265109auto265109Theobroma cacaoCDS
CDS-auto265110auto265110Theobroma cacaoCDS
CDS-auto265111auto265111Theobroma cacaoCDS
CDS-auto265112auto265112Theobroma cacaoCDS
CDS-auto265113auto265113Theobroma cacaoCDS
CDS-auto265114auto265114Theobroma cacaoCDS
CDS-auto265115auto265115Theobroma cacaoCDS
CDS-auto265116auto265116Theobroma cacaoCDS
CDS-auto265117auto265117Theobroma cacaoCDS
CDS-auto265118auto265118Theobroma cacaoCDS
CDS-auto265119auto265119Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t006050.2 ID=Tc05v2_t006050.2|Name=Tc05v2_t006050.2|organism=Theobroma cacao|type=mRNA|length=855bp
ATGGAGAGCAGTTTTGAGCCCAAGATGTCAAACTCTTCATCTATAATGGA
GAACGGATATGGGGAATTCGGATGTTCGCATTATCGAAGAAGGTGCAAGA
TCAGGGCACCTTGTTGCGATGAGATATTCGACTGCAGGCATTGCCATAAT
GAATCCAAGAACTCAATCGAAGTTAATCCTTTAGATCGTCATGAGGTTCC
TCGCCATGATATTAAAAGGGTTATTTGTTCCTTGTGTGACAGAGAACAAG
ATGTTCAACAGCATTGCATTTATTGTGGGGTTTGCATGGGGAACTATTTT
TGTTCGAAATGCAACTTTTTCGATGATGATGTCTCGAAAAATCAGTACCA
TTGTGACGAATGTGGTATCTGCAGAATTGGAGGAGAGGAGAATTTTTTCC
ATTGTAATAAGTGTGGATGTTGCTATTCTACAGTGTTGAAGAACTCCCAC
AATTGTGTTGAAAAAGCTATGCACCATAATTGCGCTGTTTGCTTTGAATT
TCTCTTTGATACAACGAAAGACATAACTGTCTTACCATGTGGCCACACTA
TACATTTGGAATGTGTAAAACAGATGGAGTCTCATTTCCGGTATTCGTGT
CCTGTTTGCTCAAAATCTTACTGTGATATGTCCCGGGTGTGGGAAAGACT
TGATCGTGAGGTTGCTTCGACAGTGATGCCTCAAATTTATCAGAATAAGA
TGGTTTGGATTCTCTGTAATGACTGTGGCGAAAATTCTGAGGTTAATTTT
CATATCGTCGCACACAAGTGCCTAAAATGCAACTCATACAACACAAGGCA
GACACGGGGAGGTGCTGCTTCATGCTCGTCAGAGATTGCCGAAATAGTTA
GATGA
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protein sequence of Tc05v2_p006050.2

>Tc05v2_p006050.2 ID=Tc05v2_p006050.2|Name=Tc05v2_p006050.2|organism=Theobroma cacao|type=polypeptide|length=285bp
MESSFEPKMSNSSSIMENGYGEFGCSHYRRRCKIRAPCCDEIFDCRHCHN
ESKNSIEVNPLDRHEVPRHDIKRVICSLCDREQDVQQHCIYCGVCMGNYF
CSKCNFFDDDVSKNQYHCDECGICRIGGEENFFHCNKCGCCYSTVLKNSH
NCVEKAMHHNCAVCFEFLFDTTKDITVLPCGHTIHLECVKQMESHFRYSC
PVCSKSYCDMSRVWERLDREVASTVMPQIYQNKMVWILCNDCGENSEVNF
HIVAHKCLKCNSYNTRQTRGGAASCSSEIAEIVR*
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