Tc05v2_t000170.1

Overview
NameTc05v2_t000170.1
Unique NameTc05v2_t000170.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1179
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 20 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productpolygalacturonase
NotePolygalacturonase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597408
GenbankXM_007026441.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g000170Tc05v2_g000170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p000170.1Tc05v2_p000170.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto253293auto253293Theobroma cacaoexon
exon-auto253294auto253294Theobroma cacaoexon
exon-auto253295auto253295Theobroma cacaoexon
exon-auto253296auto253296Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto253297auto253297Theobroma cacaoCDS
CDS-auto253298auto253298Theobroma cacaoCDS
CDS-auto253299auto253299Theobroma cacaoCDS
CDS-auto253300auto253300Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t000170.1 ID=Tc05v2_t000170.1|Name=Tc05v2_t000170.1|organism=Theobroma cacao|type=mRNA|length=1179bp
ATGGCGCCTAAGCTTGTTGTGTCTTGTGCAATATTATTCTACCTCCTCTT
CTTCTGCGGAACTAGTTCATATGCAGCGTACAGTATCAATTTGATCAAGT
ATGGTGCAAAACCAGATGGAAAAACTGACTCGACCCAGCCGTTCCTCAAG
GCATGGGCAGCTGCATGCAAGTCAGCTACAGCAGCCACAATTTACGTTCC
GAAAGGGCGCTACTTGGTCAAGGCCGTGGTATTTAGAGGCCCTTGCAGGA
ACAGAATTACAGTTCAAATAGACGGCACAATTGTTGCTCCTACCGATTAT
CGTGCACTTGGGAACTCTGGCTACTGGATCTTGTTCATTAAGGTGAACAG
CGTTTCGGTAATCGGCGGCACTCTTGATGCAAAGGGAGCTGGCTTTTGGA
CATGCAGGAGATCTGGAAAGAATTGCCCTGTTGGAGCACGGTCCATAACA
TTCAATTGGGCTAACAACATTTTAGTCAGCGGCTTAACCTCCATCAACAG
TCAGCTCACTCACTTTGTGATCAACACTTGCAACGATGTGAAGGTTCAAA
ACGTGAAGCTTTATGCTCCGGACCAAAGCCCCAACACTGATGGTATCCAC
GTCCAGTCCTCAACGGGCTTGACAATCACTGGAAGCACCCTTCAAACTGG
AGACGATTGCATATCGATTGGTCCAGGCACCAGGAACCTGGTAATGACCT
CCATCAAGTGTGGCCCTGGACATGGCGTAAGCATCGGCAGTCTCGGACGG
GATCTCAATGAAGCTGGTGTTCAGAACGTGACATTGACAAATTCAGTTTT
TAGTGGATCAGATAACGGGGTACGGATTAAGACATGGGCGAGACCAAGCA
ATGGGTTTGTGAAAAACGTTGTCTTCGACAACATCATCATGAACAATGTT
AAAAACCCCATCATCATCGATCAAAATTACTGTCCCAGCAATCAAGGTTG
TCCTAGTCAGAGCTCAGGAGTGAAGATTAGCGGAGTGACATACAAAAACA
TAAGAGGAACATCTGCAACGCAGGAAGCAGTTACATTTGATTGCAGCCGT
AGCAGTCCATGCAGGGGGATCACTCTACATGACATAAAGCTCACATACAT
GAATAAAGCAGCTACGTCGTCCTGCAAAAACGTAGGGGGAACCAGCAGAG
GAGTAGTTGTGCCCAAGAGCTGCTTATAA
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protein sequence of Tc05v2_p000170.1

>Tc05v2_p000170.1 ID=Tc05v2_p000170.1|Name=Tc05v2_p000170.1|organism=Theobroma cacao|type=polypeptide|length=393bp
MAPKLVVSCAILFYLLFFCGTSSYAAYSINLIKYGAKPDGKTDSTQPFLK
AWAAACKSATAATIYVPKGRYLVKAVVFRGPCRNRITVQIDGTIVAPTDY
RALGNSGYWILFIKVNSVSVIGGTLDAKGAGFWTCRRSGKNCPVGARSIT
FNWANNILVSGLTSINSQLTHFVINTCNDVKVQNVKLYAPDQSPNTDGIH
VQSSTGLTITGSTLQTGDDCISIGPGTRNLVMTSIKCGPGHGVSIGSLGR
DLNEAGVQNVTLTNSVFSGSDNGVRIKTWARPSNGFVKNVVFDNIIMNNV
KNPIIIDQNYCPSNQGCPSQSSGVKISGVTYKNIRGTSATQEAVTFDCSR
SSPCRGITLHDIKLTYMNKAATSSCKNVGGTSRGVVVPKSCL*
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