Tc04v2_t001770.1

Overview
NameTc04v2_t001770.1
Unique NameTc04v2_t001770.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length387
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 13, transcript variant X1
NoteTranscription initiation factor TFIID subunit 13
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600861
GenbankXM_007031569.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g001770Tc04v2_g001770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p001770.1Tc04v2_p001770.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto202547auto202547Theobroma cacaoexon
exon-auto202548auto202548Theobroma cacaoexon
exon-auto202549auto202549Theobroma cacaoexon
exon-auto202550auto202550Theobroma cacaoexon
exon-auto202551auto202551Theobroma cacaoexon
exon-auto202552auto202552Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto202553auto202553Theobroma cacaoCDS
CDS-auto202554auto202554Theobroma cacaoCDS
CDS-auto202555auto202555Theobroma cacaoCDS
CDS-auto202556auto202556Theobroma cacaoCDS
CDS-auto202557auto202557Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t001770.1 ID=Tc04v2_t001770.1|Name=Tc04v2_t001770.1|organism=Theobroma cacao|type=mRNA|length=387bp
ATGAGTAACCAATCAACAGGAACCTCTTCAAAATCGAAAGTTGGGTCTTC
ACAGCCCTCAGAAACTTCATTCAAGCGTAAAAGAGGAGTTTTTCAGAAAG
ATTTGCAGCATATGATGTATGGTTTTGGAGATGATCCCAATCCACTTCCA
GAGACTGTTTCGCTTGTGGAGGACATTGTTGTGGAATATGTAACAGATCT
GGCACATAAAGCCCAAGATATTGGATCAAAGAGGGGAAAGCTATCAGTTG
AGGATTTTCTTTACCTAATTCGCAAGGATTTGCCCAAACTAAATCGTTCT
ACAGAATTGCTATCCATGCAAGAGGAGCTGAAACAAGCAAGGAAGGCATT
CGAGGTTGATGAAGAGAAACTGGGAACAACAGAGTAA
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protein sequence of Tc04v2_p001770.1

>Tc04v2_p001770.1 ID=Tc04v2_p001770.1|Name=Tc04v2_p001770.1|organism=Theobroma cacao|type=polypeptide|length=129bp
MSNQSTGTSSKSKVGSSQPSETSFKRKRGVFQKDLQHMMYGFGDDPNPLP
ETVSLVEDIVVEYVTDLAHKAQDIGSKRGKLSVEDFLYLIRKDLPKLNRS
TELLSMQEELKQARKAFEVDEEKLGTTE*
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