Tc01v2_t005420.1

Overview
NameTc01v2_t005420.1
Unique NameTc01v2_t005420.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1305
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProducttRNA-dihydrouridine(16/17) synthase [NAD(P)( )]-like
NoteFMN-linked oxidoreductases superfamily protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611184
GenbankXM_007047301.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g005420Tc01v2_g005420Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p005420.1Tc01v2_p005420.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto12153auto12153Theobroma cacaoexon
exon-auto12154auto12154Theobroma cacaoexon
exon-auto12155auto12155Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto12156auto12156Theobroma cacaoCDS
CDS-auto12157auto12157Theobroma cacaoCDS
CDS-auto12158auto12158Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t005420.1 ID=Tc01v2_t005420.1|Name=Tc01v2_t005420.1|organism=Theobroma cacao|type=mRNA|length=1305bp
ATGAAACACCCCAAACCCCACCTTTTTTCGTTCTTAAGTTTCTACCAAAA
ACCTCTCTTCTCCAACCCCATCTCCCTCATGGCCCAAACCCAAATCCGAA
CTATCCGCTCGGATCCACCTCAAAATGACAACAGCAACGACGACGATGCC
CTCCTTTGCTCCAAACCACAACAGAACCAAGAGGAACAGTCTTCTTCTCA
AGTTGATGACACGCCGTCGTCGATAGGGTCTCCGGGGAGGTACTTCAGCT
GGGAATCACGAGTGGAGAGGGCATGGGCTCATTGGGCCAAGCTTGGCCGG
CCCAAGTTAATCGTGGCCCCGATGGTTGACAACTCCGAGCTGCCGTTTCG
GATGCTCTGTAGGAAATTCGGAGCAGAGGCTGCGTATACGCCCATGTTGC
ATTCACGTATTTTTACTGAGAATGAAAAGTACCGTAATGAAGAATTTACC
ACTTGCAAGGAGGACCGTCCATTATTTGTCCAATTTTGTGCTAATGATCC
AGATGTTTTACTTGAAGCTGCAAGGAGAGTTGAACCTTATTGTGATTATG
TCGACATTAATTTGGGGTGTCCTCAGCGTATTGCTAGGCGAGGGTATTAT
GGAGCTTTCTTGATGGATAACCTTCCTCTTGTGAAATCTTTAGTGGAAAA
ACTGGCTTTGAATCTTAATGTGCCGGTTTCTTGCAAAATCAGAGTATTTC
CTAATTTACAGGATACTATCAAGTATGCAAAGATGCTGGAGGGCGCTGGT
TGTTCTCTTTTGGCTGTTCATGGCCGAACAAGAGATGAGAAAGATGGGAA
GAGGTTTCGAGCTGATTGGAATGCCATTAAGGCTGTTAAAAATGCGCTTG
GAATCCCTGTTCTTGCCAATGGGAACATTAGGCATATGGAGGATGTTCAG
AACTGTCTGGAAGAGACAGGTGCTGATGGTGTGCTTTCGGCTGAGTCTCT
TCTTGAGAATCCTGCTCTTTTTGCTGGATTTCGAACCGCTGACTGGGTGG
GGGATAATGAAAAAGACAATATAGAGGGAAAACTAGACCAGGCAGAACTG
CTTGTGGAGTATTTGAAGATCTGTGAAAGATACCCTGTCCCATGGCGGAT
GATCCGATCTCATGTGCACAAAATGCTGGGAGACTGGTTTCGGATTCAGC
CACACGTTAGAGAGGATCTAAATTCACAGTCCAGGCTAACATTTGAATTT
CTTTACAATCTGGTGGATCAGTTACGTGAGTTGGGTGTAAGAATTCCACT
CTATCAAAAGGACACATCTGCAGCCGGAAGCTCAGCTGAGGATGTGGCTA
TTTGA
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protein sequence of Tc01v2_p005420.1

>Tc01v2_p005420.1 ID=Tc01v2_p005420.1|Name=Tc01v2_p005420.1|organism=Theobroma cacao|type=polypeptide|length=435bp
MKHPKPHLFSFLSFYQKPLFSNPISLMAQTQIRTIRSDPPQNDNSNDDDA
LLCSKPQQNQEEQSSSQVDDTPSSIGSPGRYFSWESRVERAWAHWAKLGR
PKLIVAPMVDNSELPFRMLCRKFGAEAAYTPMLHSRIFTENEKYRNEEFT
TCKEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDINLGCPQRIARRGYY
GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEGAG
CSLLAVHGRTRDEKDGKRFRADWNAIKAVKNALGIPVLANGNIRHMEDVQ
NCLEETGADGVLSAESLLENPALFAGFRTADWVGDNEKDNIEGKLDQAEL
LVEYLKICERYPVPWRMIRSHVHKMLGDWFRIQPHVREDLNSQSRLTFEF
LYNLVDQLRELGVRIPLYQKDTSAAGSSAEDVAI*
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