Tc06v2_t019400.1

Overview
NameTc06v2_t019400.1
Unique NameTc06v2_t019400.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1200
Properties
Property NameValue
NoteCytochrome b561 and DOMON domain-containing protein At5g47530
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productcytochrome b561 and DOMON domain-containing protein At4g17280
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597289
GenbankXM_018123065.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g019400Tc06v2_g019400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p019400.1Tc06v2_p019400.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto351763auto351763Theobroma cacaoexon
exon-auto351764auto351764Theobroma cacaoexon
exon-auto351765auto351765Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto351766auto351766Theobroma cacaoCDS
CDS-auto351767auto351767Theobroma cacaoCDS
CDS-auto351768auto351768Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t019400.1 ID=Tc06v2_t019400.1|Name=Tc06v2_t019400.1|organism=Theobroma cacao|type=mRNA|length=1200bp
ATGGCAAGAATGTTGTTCAAACTTGTTCTATCTCTCTCTCTCTTTGTGTC
TTTGATTTTATCATCCAATGCACAAACTTGTGCCAAGTATGCCTTCTCTA
GCAACCGCGTCTTCAGGTCATGCACTGATCTTCCTGTCCTGAACTCCTTT
CTTCATTATAACTATGACTCGTCAGGAAAGCTTGAGATTGCCTACAGGCA
CACGGGGATCACTTCGTCCAGATGGGTTGCATGGGCCATAAACCCGACCT
CAACAGGCATGGTCGGCTCACAGGCACTTGTTGCCTATCAACAGACCGAT
GGAAGCATGAGAGTCTACAAATCACCCATCACTCAATACCAAACCCCGCT
GCGAGAGGGTGATCTTAGCTTTGACGTCTCGGCCTTATCCGCGACGTATG
CAAACAGTGAGATTATCATATTTGCTACCTTGGAACTTTCCAATAATGGC
ACTACTCTGAACCAAGTGTGGCAAGAAGGTGCCCTCTCTGGGAACACCCC
ACAGATGCATGCTACTTCTGGCGCCAACGTTCAGTCTATGGGAACCTTGA
ATCTGGTCTCTGGTGAGGCTGGAGCAGCTGGTGGAGGAAGTTCAAGACTT
AGAAAGCGAAACATTCATGGGGTGTTAAACACAGTCAGTTGGGGTATCCT
GATGCCTATCGGTGCTATAATAGCAAGGTACTTGAAGGTATTCAAATCTG
CAGATCCTGCATGGTTTTATTTGCACGCTTCTTGTCAGTTCTCAGCATAT
GTTGTTGGTGTTGCCGGATGGGGTACCGGTCTCAAACTCGGCAGTGAATC
TCCTGGCATTCAATATGATGCTCACAGAACCATTGGGATCATCCTTTTCT
GTCTTGCAACACTTCAGGTATTTGCTTTGCTTCTAAGGCCAAAACCAGAC
CACAAACTCAGATTCTACTGGAACATCTACCACCATTTGGTGGGATACAC
TGTCATAATCCTAAGTGTCATCAACATATTCAAGGGATTCGACATCCTGA
AACCTGAGAAGAAGTGGAAGAATGCTTACATTGGTGTCATCGTGGCTTTG
GCCTTCAATGCTGTCATGTTGGAAGCCTACACATGGTTTGTTGTGGTTAG
GAGGAAAAGGTCAGAAAGTGCTGGAAAGATGCCTCATGGCGTCAATGGTG
CAAATGGAAATGGGGTTAACAGCCGTGGTGCTAGGCCACAGCAGGCTTAG
back to top

protein sequence of Tc06v2_p019400.1

>Tc06v2_p019400.1 ID=Tc06v2_p019400.1|Name=Tc06v2_p019400.1|organism=Theobroma cacao|type=polypeptide|length=400bp
MARMLFKLVLSLSLFVSLILSSNAQTCAKYAFSSNRVFRSCTDLPVLNSF
LHYNYDSSGKLEIAYRHTGITSSRWVAWAINPTSTGMVGSQALVAYQQTD
GSMRVYKSPITQYQTPLREGDLSFDVSALSATYANSEIIIFATLELSNNG
TTLNQVWQEGALSGNTPQMHATSGANVQSMGTLNLVSGEAGAAGGGSSRL
RKRNIHGVLNTVSWGILMPIGAIIARYLKVFKSADPAWFYLHASCQFSAY
VVGVAGWGTGLKLGSESPGIQYDAHRTIGIILFCLATLQVFALLLRPKPD
HKLRFYWNIYHHLVGYTVIILSVINIFKGFDILKPEKKWKNAYIGVIVAL
AFNAVMLEAYTWFVVVRRKRSESAGKMPHGVNGANGNGVNSRGARPQQA*
back to top