Tc06v2_t016530.1

Overview
NameTc06v2_t016530.1
Unique NameTc06v2_t016530.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1761
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productprotein TRANSPORT INHIBITOR RESPONSE 1, transcript variant X1
NoteProtein TRANSPORT INHIBITOR RESPONSE 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596962
GenbankXM_018123230.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g016530Tc06v2_g016530Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p016530.1Tc06v2_p016530.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto346130auto346130Theobroma cacaoexon
exon-auto346131auto346131Theobroma cacaoexon
exon-auto346132auto346132Theobroma cacaoexon
exon-auto346133auto346133Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto346134auto346134Theobroma cacaoCDS
CDS-auto346135auto346135Theobroma cacaoCDS
CDS-auto346136auto346136Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t016530.1 ID=Tc06v2_t016530.1|Name=Tc06v2_t016530.1|organism=Theobroma cacao|type=mRNA|length=1761bp
ATGGAATCGTCGGAGGTGAATATGTCGAGAGACTCGTCCGAGTTGGACGA
GTCCGCTCGGGGATCCTCATCACCCGACCTAGCGCTCGAGCGAGTTCTAT
CTCTTTTGAAATCTCACAGGGACAGGAGCTCCGTTTCTCTGGTCTGCAAG
GACTGGTACAACGCGGAACGGTGGTCGAGGACTCACGTTTTCATCGGAAA
CTGTTACTCCGTCTCGCCGGAGATCGTCGCACGGCGGTTCCCGAAAATCC
GGAGCGTGACGTTGAAAGGGAAGCCTAGGTTTTCCGACTTCAACTTGGTG
CCGCAGAACTGGGGGGCCGATATCCACCCTTGGCTGGTCGTTTTCGCCGC
TAAATATCCGTTCCTCGAAGAGCTCAGGCTTAAGCGAATGACAATCAGCG
ACGAAAGCTTGGAGTTTTTAGCCGTTTCTTTTCCCAACTTCAAAGCTCTC
TCGCTTTTAAGCTGCGACGGTTTTAGCACTGACGGACTCGCCATCATTGC
CACTCATTGCAAGAACTTGACTGAGCTGGACATACAGGAGAATGGCATTG
ATGATAAAGGAGGTAGTTGGTTGAGCTGCTTCCCTGAAAGCTTCACATCA
TTGGAAGCACTGAACTTTGCCAACTTGACCAGTGATATTAATTTCGATGC
TCTTGAGAGGCTTGTAGGTAGGTGCAAGTCAATGAGGGTTTTAAAGGTCA
ACAGGAGCATATCCTTGGAACAATTACAAAGACTTCTTGTTAATGCTCTT
CAATTGGCCGAGCTTGGTACAGGCTCATTCTCACAAGAACTTACTTTCCG
CCAATATGAAGAGCTTGAAAGCACATTAAGTAGCTCCAAGAATATTCATA
CACTATCTGGTTTGTGGGAGGCCAAGGGCTTACATCTCCCTGCTTTATAC
CCTGTGTGCACACATCTGACTTTCTTGAGCTTGAGCTATGCTCCTTTGCA
AAGTGGTGAACTCGCTAAGCTTCTTGCTCATTGTCCACAACTTCGACGCC
TCTGGGTCTTGGACACAGTAGAAGACGAAGGACTGGAAGCCGTTGGATCG
AGCTGCCCTTTGCTTGAAGAACTTAGAGTTTTCCCTGCTGATCCCTTTGA
TGAGGATATTATCCATGGAGTCACTGAAGCTGGGTTTGTTGCTGTGTCTT
ATGGTTGCCCAAGACTCCACTATGTCCTCTATTTTTGTCGGCAGATGACT
AATGCAGCTGTAGCAACCATTGTACAGAACTGCCCTGATTTTACGCATTT
CCGATTATGCATAATGGACCCAGGTCAACCAGATTATCTCACAAATGAAC
CCATGGATGAAGCTTTTGGTGCAGTGGTTAAGACATGCACTAAACTCCAG
AGGCTTTCAGTTTCAGGTCTCTTAACCGATCTGACATTTGAGTATATTGG
AAGGTATGCGAAGAACTTGGAGACCCTTTCAGTGGCTTTTGCAGGCAGCA
GTGACTGGGGGATGCAGTGTGTTCTGACAGGTTGTCCGAAACTAAGGAAA
CTTGAGATAAGAGACTGCCCATTTGGCAATGCAGCACTGCTGTCAGGTTT
GGACAAGTATGAGTCCATGAGGTCACTTTGGATGTCAGCCTGCCATGTGA
CAATGGATGGCTGCAGGCAATTGGCAAGGGAGATGCCCAGATTGAATGTT
GAGGTAATGAAGGAGGATGGAAGTGATGATAGTGAAGCTGATAAAGTCTA
TGTTTATCGTTCTATTGCAGGCCCAAGGAGGGATGCCCCACCATTTGTGC
TTACTCTCTGA
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protein sequence of Tc06v2_p016530.1

>Tc06v2_p016530.1 ID=Tc06v2_p016530.1|Name=Tc06v2_p016530.1|organism=Theobroma cacao|type=polypeptide|length=587bp
MESSEVNMSRDSSELDESARGSSSPDLALERVLSLLKSHRDRSSVSLVCK
DWYNAERWSRTHVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLV
PQNWGADIHPWLVVFAAKYPFLEELRLKRMTISDESLEFLAVSFPNFKAL
SLLSCDGFSTDGLAIIATHCKNLTELDIQENGIDDKGGSWLSCFPESFTS
LEALNFANLTSDINFDALERLVGRCKSMRVLKVNRSISLEQLQRLLVNAL
QLAELGTGSFSQELTFRQYEELESTLSSSKNIHTLSGLWEAKGLHLPALY
PVCTHLTFLSLSYAPLQSGELAKLLAHCPQLRRLWVLDTVEDEGLEAVGS
SCPLLEELRVFPADPFDEDIIHGVTEAGFVAVSYGCPRLHYVLYFCRQMT
NAAVATIVQNCPDFTHFRLCIMDPGQPDYLTNEPMDEAFGAVVKTCTKLQ
RLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLTGCPKLRK
LEIRDCPFGNAALLSGLDKYESMRSLWMSACHVTMDGCRQLAREMPRLNV
EVMKEDGSDDSEADKVYVYRSIAGPRRDAPPFVLTL*
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