Tc06v2_t009900.2

Overview
NameTc06v2_t009900.2
Unique NameTc06v2_t009900.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length519
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 9, transcript variant X2
NoteTranscription initiation factor TFIID subunit 9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596227
GenbankXM_018122577.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g009900Tc06v2_g009900Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p009900.2Tc06v2_p009900.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto332168auto332168Theobroma cacaoexon
exon-auto332169auto332169Theobroma cacaoexon
exon-auto332170auto332170Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto332171auto332171Theobroma cacaoCDS
CDS-auto332172auto332172Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t009900.2 ID=Tc06v2_t009900.2|Name=Tc06v2_t009900.2|organism=Theobroma cacao|type=mRNA|length=519bp
ATGGCAGAAGGGGAAGAGGACCTGCCAAGGGATGCTAAGATTGTGAAGTC
GTTGCTGAAATCAATGGGTGTCGAGGACTATGAACCTCGCGTTATTCATC
AGTTTCTTGAGCTGTGGTATCGTTATGTTGTCGACGTGTTGACAGATGCG
CAGGTCTACTCGGAGCATGCTGGGAAGCAAACCATCGACTGCGATGATGT
CAAGCTTGCTATTCAATCCAAAGTCAATTTCAGCTTCTCACAACCCCCAC
CGCGAGAGGTGCTATTGGAGTTAGCAAGAAATCGGAACAAAGTTCCATTG
CCAAAGGCCATACCGGCACCTGGTATCGCCATCCCACCTGACCAGGATAC
GTTGATCAACACAAACTACCAATTTGCTATCCCTAGGAAGCAGGCAGTGG
AAGAGACAGAAGAGGATGAAGAAAGTGTTGATCCTAATCCCTCCCAAGAG
CAGAAGACAGATATGCCGCAGCCAACTTCTCAAAGAGTATCATTTCCCCT
AGCTAAGCGCTCAAAGTAA
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protein sequence of Tc06v2_p009900.2

>Tc06v2_p009900.2 ID=Tc06v2_p009900.2|Name=Tc06v2_p009900.2|organism=Theobroma cacao|type=polypeptide|length=173bp
MAEGEEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDA
QVYSEHAGKQTIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKVPL
PKAIPAPGIAIPPDQDTLINTNYQFAIPRKQAVEETEEDEESVDPNPSQE
QKTDMPQPTSQRVSFPLAKRSK*
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