Tc03v2_t007890.3

Overview
NameTc03v2_t007890.3
Unique NameTc03v2_t007890.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length579
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productuncharacterized LOC18604770, transcript variant X3
NoteRING/U-box superfamily protein, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604770
GenbankXM_007037403.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g007890Tc03v2_g007890Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p007890.3Tc03v2_p007890.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto155410auto155410Theobroma cacaoexon
exon-auto155411auto155411Theobroma cacaoexon
exon-auto155412auto155412Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto155413auto155413Theobroma cacaoCDS
CDS-auto155414auto155414Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t007890.3 ID=Tc03v2_t007890.3|Name=Tc03v2_t007890.3|organism=Theobroma cacao|type=mRNA|length=579bp
ATGTGGAATTTTGCTACAAAGGCCTTTCCTGGAGCCAGCGGGTTGAAGAC
TGATTCATTGAAACCGAGTCAGGTTTCTTCAGAATGCTCAGATGATGAAT
CTTTGAACAACAGTGGAGAGGAAAGGTTGGAATGCCCAATATGCTGGGAA
TCCTTCAATATTGTAGAGAACATACCCTATGTTTTATGGTGTGGCCATAC
TCTATGTAAAAATTGCGTCTTAGGGCTGCAACGGGCTGTTGTGAAGTTCC
CTACATTACCAATCCATCTTCCATTCTTTGTCTCTTGCCCATGGTGTAAT
CTATTCTCTTTGAGGTTGGTCTACAAGGGGAATGTCAAGTTTCCCAGCAA
GAACTACTTTCTCCTCTGGATGGTTGAGAGCATGAATGGTGATAGGGCAA
AGTCTCATTCTTCCTTTCATGGGGTTCCACCTGCCTGCTCTAAAAATAGA
ATAATAGATGCAGGAAATCAGCTTAGGCGTGTAAACAACAGGCGAGCTTC
ATGTTCTACTCACCATTCAGAGTCCAGCTTGATCACTAGCTATTTCAGTG
CTGAAAGACTCCAATTATCGCTCCGTTAA
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protein sequence of Tc03v2_p007890.3

>Tc03v2_p007890.3 ID=Tc03v2_p007890.3|Name=Tc03v2_p007890.3|organism=Theobroma cacao|type=polypeptide|length=193bp
MWNFATKAFPGASGLKTDSLKPSQVSSECSDDESLNNSGEERLECPICWE
SFNIVENIPYVLWCGHTLCKNCVLGLQRAVVKFPTLPIHLPFFVSCPWCN
LFSLRLVYKGNVKFPSKNYFLLWMVESMNGDRAKSHSSFHGVPPACSKNR
IIDAGNQLRRVNNRRASCSTHHSESSLITSYFSAERLQLSLR*
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