Tc02v2_t018250.1

Overview
NameTc02v2_t018250.1
Unique NameTc02v2_t018250.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length825
Properties
Property NameValue
NoteRING/U-box superfamily protein, putative
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductE3 ubiquitin-protein ligase RNF38
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609054
GenbankXM_018114574.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g018250Tc02v2_g018250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p018250.1Tc02v2_p018250.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto114748auto114748Theobroma cacaoexon
exon-auto114749auto114749Theobroma cacaoexon
exon-auto114750auto114750Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto114751auto114751Theobroma cacaoCDS
CDS-auto114752auto114752Theobroma cacaoCDS
CDS-auto114753auto114753Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t018250.1 ID=Tc02v2_t018250.1|Name=Tc02v2_t018250.1|organism=Theobroma cacao|type=mRNA|length=825bp
ATGAGCAGTGGCGCCAATAATAACACACCATTTTGGCCGACTTGGCGATC
TGGACATGACTATGGTGCCTATGCTCCTACCAACAGCAATGATCCGAACC
GCATCGAGCCTATTTTTCGTCATTCCCTTCCCTTCCAAGCCACTGCAGAT
GCCAGTAGAGGTTCAAGGGACCCTTGGCAGATGCCAGAGGAGAGAGTGAC
AACACGACCTTTCAGCTTGTCAGGTTTCCCAGATCTTCCACGTACTCGTA
CTCCAGTGCAAATTGTATGGCTTGACAATGTCCCAGCAAGGGCGGTAAAT
CCCAGGTTCTCAGGACCCCTTCAAAGGTTCACAGTCCAGCAAGTACAGCT
CCCAGCTTCCCCTGCCCAACAAGAAGATTCCAGATCGGCTCGAGACGAGC
AAAGCAATGCTTTAAGTAAGCTGAAGAAGGAAATTTACAATCCTATCCCC
AAGCAGATGACAAGGAGGTTAAGCATGTACTACAGGGATCAAAACAGAAG
CAACTTGTATAATGAGAAGGAAAGAGAGAAAGACGAGGATGGGAAGAGGT
GTGCAATTTGCTTGGAAGATTTTGAGCCTAGAGAGCAAGTCATGCTCACT
CCATGTGACCATATGTTCCATGAGGAATGCATCGTCCCATGGGTGAAGAG
TCATGGCCAATGTCCAGTCTGCAGATTTGTGCTTAGCGAGCGCATTAGAC
AGAATGCATCTTCTATAAGCAATAACAACGCCTCAAATGTAGCTGCAACT
GACCTATTTGCAGGAGAGTTGATCTCGATTATAAGGGCAATGGAGGAGGC
TTTCCTATGGGGCAATTCCCATTGA
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protein sequence of Tc02v2_p018250.1

>Tc02v2_p018250.1 ID=Tc02v2_p018250.1|Name=Tc02v2_p018250.1|organism=Theobroma cacao|type=polypeptide|length=275bp
MSSGANNNTPFWPTWRSGHDYGAYAPTNSNDPNRIEPIFRHSLPFQATAD
ASRGSRDPWQMPEERVTTRPFSLSGFPDLPRTRTPVQIVWLDNVPARAVN
PRFSGPLQRFTVQQVQLPASPAQQEDSRSARDEQSNALSKLKKEIYNPIP
KQMTRRLSMYYRDQNRSNLYNEKEREKDEDGKRCAICLEDFEPREQVMLT
PCDHMFHEECIVPWVKSHGQCPVCRFVLSERIRQNASSISNNNASNVAAT
DLFAGELISIIRAMEEAFLWGNSH*
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