Tc01v2_t016570.1

Overview
NameTc01v2_t016570.1
Unique NameTc01v2_t016570.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1212
Properties
Property NameValue
NoteIndole-3-glycerol phosphate synthase, chloroplastic
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productindole-3-glycerol phosphate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612499
GenbankXM_018122628.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g016570Tc01v2_g016570Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p016570.1Tc01v2_p016570.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto37759auto37759Theobroma cacaoexon
exon-auto37760auto37760Theobroma cacaoexon
exon-auto37761auto37761Theobroma cacaoexon
exon-auto37762auto37762Theobroma cacaoexon
exon-auto37763auto37763Theobroma cacaoexon
exon-auto37764auto37764Theobroma cacaoexon
exon-auto37765auto37765Theobroma cacaoexon
exon-auto37766auto37766Theobroma cacaoexon
exon-auto37767auto37767Theobroma cacaoexon
exon-auto37768auto37768Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto37769auto37769Theobroma cacaoCDS
CDS-auto37770auto37770Theobroma cacaoCDS
CDS-auto37771auto37771Theobroma cacaoCDS
CDS-auto37772auto37772Theobroma cacaoCDS
CDS-auto37773auto37773Theobroma cacaoCDS
CDS-auto37774auto37774Theobroma cacaoCDS
CDS-auto37775auto37775Theobroma cacaoCDS
CDS-auto37776auto37776Theobroma cacaoCDS
CDS-auto37777auto37777Theobroma cacaoCDS
CDS-auto37778auto37778Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t016570.1 ID=Tc01v2_t016570.1|Name=Tc01v2_t016570.1|organism=Theobroma cacao|type=mRNA|length=1212bp
ATGAGGTCATTGAAACACAGCCAAACCCAATCAATTGCACAACCCCCTTG
TTGCTTTTCAATTGCAAAAATGTTGGTATTGGTTTTCCTGATAGCGATTG
CTGGAATTTCGTTTCAATCAGTTCCTTCCTTCAATCACCGTCCTAATTTC
TTCATCCGCCGCTTCAATTTTCCGGGCATCCGAGCCCAACAGTCGGAGGT
CAAACCCCCGAAAAGGGGAGAGGAGGCAGATGCGTTGAAACTGAAGGAAT
GGGTAATTGGAATGTTACAAAACGAAGTCGCTGCGAGTCAAGGCATAAGA
ATAAGGCGAAGACAACCTACGGGTCCGCCGTCGCATTACGTGGGCCCCTT
CGAGATCGGTTTAGAAAACGAGGATAAAACTCCTCGCAATACTCTCGAAG
AAATCATTTGGCAAAAAGACGTGGAAGTTTCCCAAATGAAAGAGAAGAAG
CCTCTGGCTTCATTGGAGAAGTTTATCGAGAATGCAGCTCCCACTAGAGA
CTTCGTCGGAGCTCTTAAGGCGGCGCATTCACGGACTGGGTTGCCTGGTT
TGATTGCTGAAGTTAAGAAGGCTTCGCCTACCAGAGGAATTCTCAGAGAG
GATTTTGATCCAGTTGAGATTGCTAGGGCATATCAGAAGGGTGGAGCCGC
ATGCCTTAGTGTTTTGACTGATGAAAAGTTTTTTAAGGGAAGCTTTGAAA
ATTTGGAGGCAATAAGGAGTGCTGGAGTAAAGTGCCCTCTACTTTGCAAA
GAATTTGTGATAGATGCATGGCAGATATATTATGCTCGAATTAAGGGAGC
AGATGCAATACTTTTAATTGCTGCTGTTTTGCCTGATCATGAAATCAGAT
ACATGGTTGAAATCTGCAAGATGCTTGGTTTGGCAGCGCTTGTAGAGGTG
CACGATGAGAGGGAAATGGATCGCGTTCTTGGTATCGAAGGGATTGAACT
TATTGGCATCAATAATCGTAACCTCAAGACATTTGAGCTAGATATCAGTA
ACACAAAGAAGCTTCTTGAAGGAGAGCGTGGCGAAATGGTCCATCAGAAA
GATATAATAGTCGTAGGGGAATCTGGGCTGTTTACTCCAGATCATGTTGC
TTATGTACAAGAAGCTGGTGTTAAAGCTGTTTTGGTTGGGGAGTCAATAG
TGACGCAAAGAGACCTTGGAAAGGGAATAACTAGGCTTTTTGGTAAAGAC
ATTTCTTTGTGA
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protein sequence of Tc01v2_p016570.1

>Tc01v2_p016570.1 ID=Tc01v2_p016570.1|Name=Tc01v2_p016570.1|organism=Theobroma cacao|type=polypeptide|length=404bp
MRSLKHSQTQSIAQPPCCFSIAKMLVLVFLIAIAGISFQSVPSFNHRPNF
FIRRFNFPGIRAQQSEVKPPKRGEEADALKLKEWVIGMLQNEVAASQGIR
IRRRQPTGPPSHYVGPFEIGLENEDKTPRNTLEEIIWQKDVEVSQMKEKK
PLASLEKFIENAAPTRDFVGALKAAHSRTGLPGLIAEVKKASPTRGILRE
DFDPVEIARAYQKGGAACLSVLTDEKFFKGSFENLEAIRSAGVKCPLLCK
EFVIDAWQIYYARIKGADAILLIAAVLPDHEIRYMVEICKMLGLAALVEV
HDEREMDRVLGIEGIELIGINNRNLKTFELDISNTKKLLEGERGEMVHQK
DIIVVGESGLFTPDHVAYVQEAGVKAVLVGESIVTQRDLGKGITRLFGKD
ISL*
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