Tc10v2_t012460.1

Overview
NameTc10v2_t012460.1
Unique NameTc10v2_t012460.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2169
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productflowering time control protein FY, transcript variant X1
NoteFlowering time control protein FY
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587290
GenbankXM_007011002.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g012460Tc10v2_g012460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p012460.1Tc10v2_p012460.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto510180auto510180Theobroma cacaoexon
exon-auto510181auto510181Theobroma cacaoexon
exon-auto510182auto510182Theobroma cacaoexon
exon-auto510183auto510183Theobroma cacaoexon
exon-auto510184auto510184Theobroma cacaoexon
exon-auto510185auto510185Theobroma cacaoexon
exon-auto510186auto510186Theobroma cacaoexon
exon-auto510187auto510187Theobroma cacaoexon
exon-auto510188auto510188Theobroma cacaoexon
exon-auto510189auto510189Theobroma cacaoexon
exon-auto510190auto510190Theobroma cacaoexon
exon-auto510191auto510191Theobroma cacaoexon
exon-auto510192auto510192Theobroma cacaoexon
exon-auto510193auto510193Theobroma cacaoexon
exon-auto510194auto510194Theobroma cacaoexon
exon-auto510195auto510195Theobroma cacaoexon
exon-auto510196auto510196Theobroma cacaoexon
exon-auto510197auto510197Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto510198auto510198Theobroma cacaoCDS
CDS-auto510199auto510199Theobroma cacaoCDS
CDS-auto510200auto510200Theobroma cacaoCDS
CDS-auto510201auto510201Theobroma cacaoCDS
CDS-auto510202auto510202Theobroma cacaoCDS
CDS-auto510203auto510203Theobroma cacaoCDS
CDS-auto510204auto510204Theobroma cacaoCDS
CDS-auto510205auto510205Theobroma cacaoCDS
CDS-auto510206auto510206Theobroma cacaoCDS
CDS-auto510207auto510207Theobroma cacaoCDS
CDS-auto510208auto510208Theobroma cacaoCDS
CDS-auto510209auto510209Theobroma cacaoCDS
CDS-auto510210auto510210Theobroma cacaoCDS
CDS-auto510211auto510211Theobroma cacaoCDS
CDS-auto510212auto510212Theobroma cacaoCDS
CDS-auto510213auto510213Theobroma cacaoCDS
CDS-auto510214auto510214Theobroma cacaoCDS
CDS-auto510215auto510215Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t012460.1 ID=Tc10v2_t012460.1|Name=Tc10v2_t012460.1|organism=Theobroma cacao|type=mRNA|length=2169bp
ATGATGTACGGTGATCCACAACAGCAGCAGAACCAGCCGCCGCCGTCCCA
AGGTGGGGAGTTCCCAAGAGGTCCTCCCCCGCCGCCCCCGCAAATGATGC
GGCAGCCCTCAGCTTCTTCCACTACTCTGAACTCGGAGTATCACCACCCT
GCTCCTCCTCAGATTCCGCCTTATGACGCTCATGGTGACAACTTTGCTGC
AAAAAGAATGAGAAAGCTGACCCAAAGGAGAGCTGTTGATTATACAAGCA
CTGTTGTGCGATATATGCAGATTCGCATGTGGCAACGAGATTCACGGGAC
AGGACAGTATTGCAGCCTACTCCAGCAGCAGCAATTGATGTGTTGCCCAC
AGCTGCCTATATAGATAATCCATCCACCAGCTTTGCTGCCAAATTTGTTC
ATACATCTCTAAACAAAAATCGGTGTTCAATAAATCGTGTTTTGTGGACT
CCCACGGGCAGACGTCTCATCACAGGTTCTCAGAGTGGGGAATTTACTCT
ATGGAATGGACAGTCATTTAATTTTGAAATGATTCTTCAGGCCCATGATC
AAGCTATCAGGTCTATGGTATGGAGTCACAATGACAACTGGATGGTTTCT
GGTGATGATGGGGGTGCAATAAAGTATTGGCAGAATAACATGAATAATGT
TAAGTTCAATAAATCTGCTCACAAAGAATCAGTTCGTGACTTAAGTTTCT
GTAGGACAGATTTAAAGTTTTGTTCCTGTTCTGATGACACTACTGTAAAA
GTGTGGGACTTTGCCCGGTGCCAGGAGGAGCGTTCTTTAACTGGCCATGG
TTGGGATGTGAAAAGTGTTGATTGGCACCCTACAAAATCCTTACTGGTTT
CAGGTGGAAAAGACAACCTCGTGAAACTTTGGGATGCTAAGACAGGGAGA
GAGCTTTGCTCATTTCATGGCCACAAAAACACAGTACTTTGTGTCAAATG
GAACCAAAATGGTAATTGGGTGTTGACTGCTGCAAAGGATCAAATCATCA
AGCTTTATGACATCAGGGCTATGAAGGAGCTTGAATCTTTCCGAGGCCAC
CGAAAGGATGTGACTGCATTGGCTTGGCACCCATTCCATGAAGAATACTT
TGTCAGTGGGAGTTTTGATGGATCCATTTTCCATTGGCTTGTTGGGCATG
AAACTCCCCAGGTTGAAATTCCCAATGCCCATGATAATAGCGTGTGGGAT
ATTGCCTGGCATCCTATTGGATATCTTCTATGCAGTGGTAGCAATGATCA
CACGACAAAGTTTTGGTGCAGAAATAGGCCTGGAGATACTGCTCGTGATA
AATTTAGCATGGGTCAGAACCAAGGCTATGGTGAGCAAAACCCTGCACTA
GCTGGTCGTATGCCTGGTAATTTTGCAGCACCTGAAGGTCCAACAACTCC
GGGACCATATGCTGCTGGATTGACTCGAAATGAGGGAACAATTCCCGGTG
TTGGAGTTCCGATGCCATTATCAGTTCCAACTCTTGATGGATCTGCTCAG
GGGGACCAAAAGCAGCCTCTTCCAGGTTCCATGCCTTTTGGAGCTCCACC
TCTTCCTCCCGGTCCACATCCATCTCTTCTTGTTGCCAATCAGCAGCAGG
GATATCAACAAAATCCTCAACAGATGCAACAACAGCAAATGCCTCCTATG
CAAATGGCACCTCCAAATATGTCACAGCTACAGCCTCCATCTCATATGCC
CCTGCTTCCACATCCTCATTTACAACGCCCTCCACCGCAAATGCCTCCAA
TTGGTATGCCTTCACCTGTCCCATCCTCAATGCCAGGATCTTTGCCTCCA
CCTTCATCAATGCCAACATCACATCAAATGCCAATGCCCGGTCCAATGGG
TATGCAAGGTACAATGAATCAGATGCCTCCTCCAATGCCACAAGGCCATT
TTATGGGCATGAATCCAATGCACTCAGGATCCCTGCCGAACAGTGGTGCC
CCTACAGTTGGAGGTTTTCCAAATGGTATGCAAAATATGCAAGGACCAGC
AAATGCGGGTGGAGGCCAAATGTATCCACAGGGTGGTGCATTCAATCGTG
CACAGGGTGGACAGATGCCAATGATGCCAGGGTTCAATCCTTACCAGTCT
GGTGGTCAGTCTGGTCTGCCGCCTCCACCACCACCAGGTCCCCCACCTCA
TGGTCAAACACCGCAGTAG
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protein sequence of Tc10v2_p012460.1

>Tc10v2_p012460.1 ID=Tc10v2_p012460.1|Name=Tc10v2_p012460.1|organism=Theobroma cacao|type=polypeptide|length=723bp
MMYGDPQQQQNQPPPSQGGEFPRGPPPPPPQMMRQPSASSTTLNSEYHHP
APPQIPPYDAHGDNFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRD
RTVLQPTPAAAIDVLPTAAYIDNPSTSFAAKFVHTSLNKNRCSINRVLWT
PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVS
GDDGGAIKYWQNNMNNVKFNKSAHKESVRDLSFCRTDLKFCSCSDDTTVK
VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGR
ELCSFHGHKNTVLCVKWNQNGNWVLTAAKDQIIKLYDIRAMKELESFRGH
RKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQVEIPNAHDNSVWD
IAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFSMGQNQGYGEQNPAL
AGRMPGNFAAPEGPTTPGPYAAGLTRNEGTIPGVGVPMPLSVPTLDGSAQ
GDQKQPLPGSMPFGAPPLPPGPHPSLLVANQQQGYQQNPQQMQQQQMPPM
QMAPPNMSQLQPPSHMPLLPHPHLQRPPPQMPPIGMPSPVPSSMPGSLPP
PSSMPTSHQMPMPGPMGMQGTMNQMPPPMPQGHFMGMNPMHSGSLPNSGA
PTVGGFPNGMQNMQGPANAGGGQMYPQGGAFNRAQGGQMPMMPGFNPYQS
GGQSGLPPPPPPGPPPHGQTPQ*
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