Tc10v2_t012190.1

Overview
NameTc10v2_t012190.1
Unique NameTc10v2_t012190.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3345
Properties
Property NameValue
NoteGlycoside hydrolase family 2 protein isoform 1
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productbeta-galactosidase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587232
GenbankXM_007010933.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g012190Tc10v2_g012190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p012190.1Tc10v2_p012190.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto509732auto509732Theobroma cacaoexon
exon-auto509733auto509733Theobroma cacaoexon
exon-auto509734auto509734Theobroma cacaoexon
exon-auto509735auto509735Theobroma cacaoexon
exon-auto509736auto509736Theobroma cacaoexon
exon-auto509737auto509737Theobroma cacaoexon
exon-auto509738auto509738Theobroma cacaoexon
exon-auto509739auto509739Theobroma cacaoexon
exon-auto509740auto509740Theobroma cacaoexon
exon-auto509741auto509741Theobroma cacaoexon
exon-auto509742auto509742Theobroma cacaoexon
exon-auto509743auto509743Theobroma cacaoexon
exon-auto509744auto509744Theobroma cacaoexon
exon-auto509745auto509745Theobroma cacaoexon
exon-auto509746auto509746Theobroma cacaoexon
exon-auto509747auto509747Theobroma cacaoexon
exon-auto509748auto509748Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto509749auto509749Theobroma cacaoCDS
CDS-auto509750auto509750Theobroma cacaoCDS
CDS-auto509751auto509751Theobroma cacaoCDS
CDS-auto509752auto509752Theobroma cacaoCDS
CDS-auto509753auto509753Theobroma cacaoCDS
CDS-auto509754auto509754Theobroma cacaoCDS
CDS-auto509755auto509755Theobroma cacaoCDS
CDS-auto509756auto509756Theobroma cacaoCDS
CDS-auto509757auto509757Theobroma cacaoCDS
CDS-auto509758auto509758Theobroma cacaoCDS
CDS-auto509759auto509759Theobroma cacaoCDS
CDS-auto509760auto509760Theobroma cacaoCDS
CDS-auto509761auto509761Theobroma cacaoCDS
CDS-auto509762auto509762Theobroma cacaoCDS
CDS-auto509763auto509763Theobroma cacaoCDS
CDS-auto509764auto509764Theobroma cacaoCDS
CDS-auto509765auto509765Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t012190.1 ID=Tc10v2_t012190.1|Name=Tc10v2_t012190.1|organism=Theobroma cacao|type=mRNA|length=3345bp
ATGGCTTCTTTGATAGTGGGACAGCTTGTTTTTCCATCAGAAAATGGTTA
CAAAGTGTGGGAAGATCAGTCTTTTTTTAAATGGAGAAAAAGAGATCCTC
ATGTTACTTTGCATTGCCATGAATCTGTTGAAGGATCTCTTAGATACTGG
TATGAACGCAATAAAGTGGATCTTTCAGTATCCAACACTGCAGTTTGGAA
CGATGATGCCGTTCAGAAAGCACTTGACAGTGCTGCTTTTTGGGTCAATG
GCTTGCCTTTTGTCAAGTCTTTGTCTGGTTATTGGAAATTTTTCTTGGCT
TCCAATCCTAATGCTGTTCCAAAGAATTTTTATGAAAGTGCATTTCAGGA
TTCTGATTGGGAAACTTTGCCAGTTCCTTCCAATTGGCAAATGCATGGAT
TTGATCGGCCTATTTATACAAATGTTGTTTATCCAATTCCGCTTGATCCT
CCTCATGTTCCTATAGATAACCCTACAGGCTGCTACAGGACATACTTTCA
CATTCCTGAACCATGGCAGGGTCGCAGGATTTTGTTGCACTTTGAAGCAG
TTGATTCTGCCTTCTGTGCGTGGATAAATGGGGTCCCTGTTGGATACAGT
CAGGATAGTAGATTGCCCGCTGAGTTTGAAATAACAGAATATTGTTATTC
ATGTGATTCGGACAAGAAGAATGTTCTAGCTGTTCAAGTATTTAGATGGA
GTGATGGATCTTACCTTGAAGACCAAGATCATTGGTGGTTATCTGGTATA
CACCGTGATGTGCTTCTCCTTTCTAAGCCACAGGTCTTCATAGCGGATTA
CTTTTTCAAATCAAGCCTGGCTTACAATTTTTCTTATGCTGATATACAGG
TTGAAGTGAAAATAGATTGCTCAAGAGAAATGAGTAAAGACAAAGTGCTT
ACGGACTTTACCATAGAAGCTGCATTATTTGATGCTGGGGTCTGGTACAA
CCATGATGGAAATGTTGATCTGCTTTCTTCGAATGTGGCTAACATAGTGC
TCAAAACTGTCCCGACTGGAACCCTAGGATTTCATGGTTATGTGCTTGTG
GGGAAACTGGAAAAGCCCAAGCTGTGGTCTGCTGAACAACCAAATTTGTA
TACACTGGTTATCATACTTAAGGATGCATCTGGCAACGTAGTTGACTGTG
AATCATGCCTAGTTGGTGTAAGACAAGTATCTAAAGCCCCAAAACAATTG
CTTGTTAATGGGCATCCTGTTGTAATAAGAGGTGTGAACAGGCATGAGCA
TCATCCACGTCTGGGGAAGACAAACATAGAGTCTTGCATGGTGAAAGATT
TGGTTGTAATGAAGCAAAACAATATCAACGCTGTGAGAAACAGCCACTAT
CCTCAACATCCCCGTTGGTATGAGTTGTGTGACCTGTTCGGTATCTATAT
GATAGATGAAGCCAATATTGAGACGCATGGTTTTGATCTTTCGGGACATG
TGAAGCATCTTACTCAGGAACCTGGTTGGGCCGCTGCAATGATGGACCGT
GTTATTGGCATGGTGGAAAGGGACAAAAATCATGCATGCATATTTTCTTG
GTCCTTAGGAAATGAGTCTGGATATGGACCTAATCATTCTGCTTCAGCTG
GATGGATTCGTGGAAGGGATCCTTCAAGACTAGTCCATTATGAAGGTGGT
GGGTCCAGGACCTCATCTACCGATATTATATGCCCTATGTATATGCGTGT
CTGGGACATAGTGAAGATTGCAAAAGATCCAAATGAGACACGTCCTTTGA
TATTGTGCGAGTATTCACATGCAATGGGAAACAGCAATGGAAATATACAT
GAATATTGGGAAGCAATTGATAACATATTTGGCCTCCAAGGTGGCTTTAT
ATGGGATTGGGTTGACCAGGGCCTACTGAAGGACAATGAAGATGGTAGTG
AATATTGGGCATATGGTGGTGACTTTGGGGATTCTCCCAATGATTTAAAT
TTTTGCTTGAATGGCCTTACATGGCCCGATCGAACTCCTCATCCTGCCTT
ACATGAGGTTAAGTATGTCTATCAACCAATCAAGGTTTCTATAGGCGAAA
GCATGATTAAGATAAAGAACACTAATTTTTATGAGACAACTGAAGGAGTG
GAGTTCAAATGGGCTGCTCATGGTGATGGTTGTGAACTTGGATGTGGAAT
TCTCTCTCTGCCAGTAATAGAGCCCCAGAGCAGTTATGATATAGAATGGA
AGTCAGGTCCATGGTATCCTCTATGGGCTTCCTCCGATGCTGAAGAAATA
TTTTTAACAATCACTGCTAAGCTTTTGCACTCCAAACGGTGGGTTGACGC
TGGTCATGTTGTTTCATCTACACAAGTCCAGTTGCTGGCGAAAAGAGATA
TTGTACCTCATATCATCAAAACAAAAGATGATGTCCTTTCCACTGAAATT
CTTGGGGATAATATCAGAATTAGCCAGCAGAAGTTATGGGGAATTACATT
GAATGTGAAAACTGGAAGTCTTGACAGCTGGAAGGTTCAAGGTGTCTCAA
TATTGAAAAATGGCATAATTCCATGCTTTTGGCGAGCACCCACTGATAAT
GACAAAGGGGGAGGTCCGAGTAGTTATTACTCTAGGTGGAAAGCTGCGCA
TATGGATGACATAGTTTTCCTTAGAGAAAGCTGTTCTATACAAGAAAAGA
CTGACCATGCTGTGAAAATAGTGGTTGTTTACCTTGGTGTTTCTAAGGGT
GAGAATGGTCCTTTAAATGAGTTGGAAAAAGCAGATGCTTTATTCGAAAT
TGACATGCTTTACACAATCCATGCTTCTGGTGACATCATTATTGACTCCA
ATGTAAAACCAAGTTCTAGTCTTCCTCCTTTACCACGTGTTGGAGTTGAA
TTTCACCTGGAAAAATCAGTGGACCAGGTTAAATGGTATGGAAGAGGGCC
ATTTGAGTGTTATCCAGATCGAAAAGCAGCTGCCCAAGTTGGGGTTTATG
AGCAGACAGTGGATGACATGCATGTTCCTTACATTGTTCCTGGGGAATCT
GGGGGTAGGGCAGATGTCAGATGGGTGACATTTCAAAACAAGGATGGATA
TGGAATTTATGCTTCAACTTATGGCAAATCTCCACCTATGCAAATGAATG
CAAGTTATTACAGCACAACAGAGCTTGACCGGGCAACACGCAATGAAGAG
CTTATCAAAGGGGATAGCATTGAGGTGCATCTTGACCACAAGCACATGGG
AATAGGCGGAGATGATAGCTGGACACCCTGTGTACATGAAAAGTATCTGA
TTCCGGCTGTGCCATACTCATTCTCTATCAGGTTGTGTCCGGTCACTGCA
GCTACCTCCGGCCAAAACATCTACAAATCCCAACTTCAAAATTGA
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protein sequence of Tc10v2_p012190.1

>Tc10v2_p012190.1 ID=Tc10v2_p012190.1|Name=Tc10v2_p012190.1|organism=Theobroma cacao|type=polypeptide|length=1115bp
MASLIVGQLVFPSENGYKVWEDQSFFKWRKRDPHVTLHCHESVEGSLRYW
YERNKVDLSVSNTAVWNDDAVQKALDSAAFWVNGLPFVKSLSGYWKFFLA
SNPNAVPKNFYESAFQDSDWETLPVPSNWQMHGFDRPIYTNVVYPIPLDP
PHVPIDNPTGCYRTYFHIPEPWQGRRILLHFEAVDSAFCAWINGVPVGYS
QDSRLPAEFEITEYCYSCDSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGI
HRDVLLLSKPQVFIADYFFKSSLAYNFSYADIQVEVKIDCSREMSKDKVL
TDFTIEAALFDAGVWYNHDGNVDLLSSNVANIVLKTVPTGTLGFHGYVLV
GKLEKPKLWSAEQPNLYTLVIILKDASGNVVDCESCLVGVRQVSKAPKQL
LVNGHPVVIRGVNRHEHHPRLGKTNIESCMVKDLVVMKQNNINAVRNSHY
PQHPRWYELCDLFGIYMIDEANIETHGFDLSGHVKHLTQEPGWAAAMMDR
VIGMVERDKNHACIFSWSLGNESGYGPNHSASAGWIRGRDPSRLVHYEGG
GSRTSSTDIICPMYMRVWDIVKIAKDPNETRPLILCEYSHAMGNSNGNIH
EYWEAIDNIFGLQGGFIWDWVDQGLLKDNEDGSEYWAYGGDFGDSPNDLN
FCLNGLTWPDRTPHPALHEVKYVYQPIKVSIGESMIKIKNTNFYETTEGV
EFKWAAHGDGCELGCGILSLPVIEPQSSYDIEWKSGPWYPLWASSDAEEI
FLTITAKLLHSKRWVDAGHVVSSTQVQLLAKRDIVPHIIKTKDDVLSTEI
LGDNIRISQQKLWGITLNVKTGSLDSWKVQGVSILKNGIIPCFWRAPTDN
DKGGGPSSYYSRWKAAHMDDIVFLRESCSIQEKTDHAVKIVVVYLGVSKG
ENGPLNELEKADALFEIDMLYTIHASGDIIIDSNVKPSSSLPPLPRVGVE
FHLEKSVDQVKWYGRGPFECYPDRKAAAQVGVYEQTVDDMHVPYIVPGES
GGRADVRWVTFQNKDGYGIYASTYGKSPPMQMNASYYSTTELDRATRNEE
LIKGDSIEVHLDHKHMGIGGDDSWTPCVHEKYLIPAVPYSFSIRLCPVTA
ATSGQNIYKSQLQN*
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