Tc10v2_t011950.1

Overview
NameTc10v2_t011950.1
Unique NameTc10v2_t011950.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1107
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productuncharacterized LOC18587202, transcript variant X4
NoteUncharacterized protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587202
GenbankXM_007010900.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g011950Tc10v2_g011950Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p011950.1Tc10v2_p011950.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto509081auto509081Theobroma cacaoexon
exon-auto509082auto509082Theobroma cacaoexon
exon-auto509083auto509083Theobroma cacaoexon
exon-auto509084auto509084Theobroma cacaoexon
exon-auto509085auto509085Theobroma cacaoexon
exon-auto509086auto509086Theobroma cacaoexon
exon-auto509087auto509087Theobroma cacaoexon
exon-auto509088auto509088Theobroma cacaoexon
exon-auto509089auto509089Theobroma cacaoexon
exon-auto509090auto509090Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto509091auto509091Theobroma cacaoCDS
CDS-auto509092auto509092Theobroma cacaoCDS
CDS-auto509093auto509093Theobroma cacaoCDS
CDS-auto509094auto509094Theobroma cacaoCDS
CDS-auto509095auto509095Theobroma cacaoCDS
CDS-auto509096auto509096Theobroma cacaoCDS
CDS-auto509097auto509097Theobroma cacaoCDS
CDS-auto509098auto509098Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t011950.1 ID=Tc10v2_t011950.1|Name=Tc10v2_t011950.1|organism=Theobroma cacao|type=mRNA|length=1107bp
ATGATAGTGAGAAAGAACATGGGACGTTTGTCACCACTCCTTCTTGTTAC
ATTAGTTCTTGGCTTTTGCTTTGCAACATATAATCTGGTAACAATGGTAA
TGCACAATAGATCTATTTCAAAATGGAAAGTCAACGACTCCAATGGTGGA
ATATTTTTTGATCCTGTCATTGAGATGCCTGAAAATGTGAAGAAACCAAA
CAACGCCAAACAGCCTTTCCATGTTGCCTTAACAGCTACGGATGCTCCAT
ACAGTAAATGGCAGTGTCGCGTGATGTACTATTGGTATAAAAAGCAGAAG
GACTTGCCTGGGTCAGAGATGGGAGGTTTCACACGTGTTTTGCACTCTGG
AAGTCCTGACAACTTGGTAGATGAGATTCCTACCGTTATAGTTGATCCTC
TTCCAGCAGGGCTGGATCGGGGATACATTGTCTTAAATAGGCCATGGGCT
TTTGTGCAGTGGCTGGAAAAGGCTACAATTGAGGAAGAATATATATTGAT
GGCAGAGCCTGATCACATATTTATCCGTCCCCTGCCTAATCTGGGGCATG
GAGGATACCCAGCTGCCTTTCCCTTTTTCTACATTAAGCCGGCTCAGAAT
GAAAAATTGTTAAGGAAGTTTTACCCAGAGGAGATGGGACCTGTGACAAA
TATTGATCCAATTGGCAATTCACCTGTCATAATCAAGAAGGATTTACTGG
AAAAGATTGCTCCTACTTGGATGAATGTTTCCTTAAAAATGAAGAATGAC
CCAGAGACCGATAAAGCTTTTGGATGGGTGCTAGAAATGTATGCTTATGC
TGTGGCATCAGCTTTGCATGGTGTGCAACATATTCTTCGGAAGGACTTCA
TGCTGCAGCCCCCATGGGATTTGGAAACTGGGAAAAAGTTCATAATTCAT
TACACCTATGGATGTGACTACAACATGAAGGGTGAGTTGACATATGGTAA
AATTGGTGAGTGGCGATTTGACAAGAGATCATATCTACGTGGCCCACCTC
CGCGAAATCTCTCCTTGCCTCCTCCAGGGGTCCCTGAAAGTGTGGTGACC
CTTGTCAAGATGGTGAATGAAGCAACGGCTAACATCGGCAACTGGGATAC
AGAATAA
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protein sequence of Tc10v2_p011950.1

>Tc10v2_p011950.1 ID=Tc10v2_p011950.1|Name=Tc10v2_p011950.1|organism=Theobroma cacao|type=polypeptide|length=369bp
MIVRKNMGRLSPLLLVTLVLGFCFATYNLVTMVMHNRSISKWKVNDSNGG
IFFDPVIEMPENVKKPNNAKQPFHVALTATDAPYSKWQCRVMYYWYKKQK
DLPGSEMGGFTRVLHSGSPDNLVDEIPTVIVDPLPAGLDRGYIVLNRPWA
FVQWLEKATIEEEYILMAEPDHIFIRPLPNLGHGGYPAAFPFFYIKPAQN
EKLLRKFYPEEMGPVTNIDPIGNSPVIIKKDLLEKIAPTWMNVSLKMKND
PETDKAFGWVLEMYAYAVASALHGVQHILRKDFMLQPPWDLETGKKFIIH
YTYGCDYNMKGELTYGKIGEWRFDKRSYLRGPPPRNLSLPPPGVPESVVT
LVKMVNEATANIGNWDTE*
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