Tc10v2_t010350.2

Overview
NameTc10v2_t010350.2
Unique NameTc10v2_t010350.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1824
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productuncharacterized LOC18586963, transcript variant X5
NoteRegion-like protein isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586963
GenbankXM_007010578.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010350Tc10v2_g010350Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010350.2Tc10v2_p010350.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505984auto505984Theobroma cacaoexon
exon-auto505985auto505985Theobroma cacaoexon
exon-auto505986auto505986Theobroma cacaoexon
exon-auto505987auto505987Theobroma cacaoexon
exon-auto505988auto505988Theobroma cacaoexon
exon-auto505989auto505989Theobroma cacaoexon
exon-auto505990auto505990Theobroma cacaoexon
exon-auto505991auto505991Theobroma cacaoexon
exon-auto505992auto505992Theobroma cacaoexon
exon-auto505993auto505993Theobroma cacaoexon
exon-auto505994auto505994Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505995auto505995Theobroma cacaoCDS
CDS-auto505996auto505996Theobroma cacaoCDS
CDS-auto505997auto505997Theobroma cacaoCDS
CDS-auto505998auto505998Theobroma cacaoCDS
CDS-auto505999auto505999Theobroma cacaoCDS
CDS-auto506000auto506000Theobroma cacaoCDS
CDS-auto506001auto506001Theobroma cacaoCDS
CDS-auto506002auto506002Theobroma cacaoCDS
CDS-auto506003auto506003Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010350.2 ID=Tc10v2_t010350.2|Name=Tc10v2_t010350.2|organism=Theobroma cacao|type=mRNA|length=1824bp
ATGACAGGAACCAAAGAAATTCTCCAATCAGGACAAGGTCTTGCTGATCA
TGATAATTACCATGAGTACTGTCGACTTCTTGGACGTTTTAGGCAGGGTT
TCCAATCAAGTTCTGCAGTGGAAAACCAATGCAACAACAACATGTTAATG
ATGCAGCCCCAAATGGCTATTTTTAATCCTCAACTGCCAATTCCATTGAG
TAATAATTCCAGTGCTATGTCATTGCTAAATAATGTTGGTTTCATGAATG
GAGCTAGCCAGCTTCTTCCCTCACAAAATAACCATCTGGGTGTTCCTCAA
TTTGGTCCCATTTTCCCAAACTTGAACAATGTTTCAATGTTCCAACAACT
TCATGGCCAATTCAATAACCCTTTGCAGAGCCCAAATCAACCCAATTGGT
TAAATTTACCTCAACAACTTAATCAAAATAATATGGGTTTGACAAATGGG
CAGCATCAGCAGCAACAACAACTTTTTTTGCAGAACCAATTGCAGAGCAT
TGGCCAACTTTTGAACCAAATCCCAAATCTCTCTCAGTTTGTTTCTGGTG
GTCAAACAATGGGATGCCTCAATCCTGCCGGTGTTCCTCCGAATCCACAG
TTTGGATTTATGCAGCAAAACCAGATACAGCAGCAAGCCAACCAGAGTCA
GCAAAATTTGGCAAATGTTAACGCATCAAAGCCATCGTCTTCCGCAGCAG
GTGCACAAGTACTAGGGGGCCCATCATTCAGAAAGCCAATGGGCAGTCCT
GGTAAAAGTGGTCAGAATTTGAATAATTTTCCAGGCAGAAATGTTGCTAG
GGATTCAAAATGGGGATTTCATAAGTCTAAGTTTCAGCAGTCTCGATTTC
ATCAAGTGGATAATGCAAAGAGAAAGTTTGCATCATCTAATGGACAAAAG
AAAAAAGGGCAGGATGATGAGAGGGCAGCTAAATTTCCTCATTCTAATTC
TACAAAACCAGACAAGGAAAAGAGAAAACGATCTCTTGCTTTGACCTACT
CGGAGCAAGAAATACGACAGTGGCGTGAAGAACGTAAGAAGCACTATCCG
ACAAAAACCAACATAAAGAAGAAACTCAGTGGGAAAGTATCAGATGCTGA
GGTTGCCAAATTGCGAAGTGAGCAACTCAAGGAAATTTTGGCAAAGCAAG
CTGAATTAGGAGTTGAAGTTGCAGAAATTCCTTCACACTATCTGTTAGGT
TCAGAGAAAAAGGTGAATGGAAGAGAAGAGAACAGTTGGCCATTAACAAA
GAGGGGGAGATTTGAAAAGAGGCATGATAAAAGAGTGAGATTTGATAAAA
GAGACCGTTTTTCCAGGAAAAGAAGATCAACTAATGAGGAATCATTTGAT
GGCACTTCTGTCAACAAAAGGAGCCCAACCCTTTTGCAGAAGCTTCTTAG
TGCTGATATAAGGAAAGATAAAAGTCATTTGTTGCAGGTTTTTAGATTCA
TGGTTATAAATTCTTTCTTCAAGGATTGGCCTGAGAAGCCCTTGAAATAT
CCTCTGGTGGTTGTTAGGGATGGTCTGAGCGAGGGTGAGATAGTTCGAGA
GAAACCCTTGGTTGTTGGGGAAGATAAACTAGAAGTCTGCGACAAGACAA
TGATCCAAAGTATTGTTAATGGTGAGAATAAAGATGGCGATGACAGTGAC
AATGATGGTGATCGTGAAAGCAAGGACGATAATGATGTTAATGGCGATGA
AGATGATGAAAATAAACATGACACTCAAGCTGACCAAGTGGCCTTGTATG
CTAGGGAGGAGAAAGCTGATAGTGGAGAAGGAATTGTGAGGAATGAGGAA
GAAGAGGGAGAAATAATTGACTAG
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protein sequence of Tc10v2_p010350.2

>Tc10v2_p010350.2 ID=Tc10v2_p010350.2|Name=Tc10v2_p010350.2|organism=Theobroma cacao|type=polypeptide|length=608bp
MTGTKEILQSGQGLADHDNYHEYCRLLGRFRQGFQSSSAVENQCNNNMLM
MQPQMAIFNPQLPIPLSNNSSAMSLLNNVGFMNGASQLLPSQNNHLGVPQ
FGPIFPNLNNVSMFQQLHGQFNNPLQSPNQPNWLNLPQQLNQNNMGLTNG
QHQQQQQLFLQNQLQSIGQLLNQIPNLSQFVSGGQTMGCLNPAGVPPNPQ
FGFMQQNQIQQQANQSQQNLANVNASKPSSSAAGAQVLGGPSFRKPMGSP
GKSGQNLNNFPGRNVARDSKWGFHKSKFQQSRFHQVDNAKRKFASSNGQK
KKGQDDERAAKFPHSNSTKPDKEKRKRSLALTYSEQEIRQWREERKKHYP
TKTNIKKKLSGKVSDAEVAKLRSEQLKEILAKQAELGVEVAEIPSHYLLG
SEKKVNGREENSWPLTKRGRFEKRHDKRVRFDKRDRFSRKRRSTNEESFD
GTSVNKRSPTLLQKLLSADIRKDKSHLLQVFRFMVINSFFKDWPEKPLKY
PLVVVRDGLSEGEIVREKPLVVGEDKLEVCDKTMIQSIVNGENKDGDDSD
NDGDRESKDDNDVNGDEDDENKHDTQADQVALYAREEKADSGEGIVRNEE
EEGEIID*
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