Tc10v2_t010210.6

Overview
NameTc10v2_t010210.6
Unique NameTc10v2_t010210.6
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1947
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productcleavage stimulation factor subunit 77, transcript variant X6
NoteCleavage stimulation factor subunit 77
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586939
GenbankXM_018129331.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010210Tc10v2_g010210Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010210.6Tc10v2_p010210.6Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505614auto505614Theobroma cacaoexon
exon-auto505615auto505615Theobroma cacaoexon
exon-auto505616auto505616Theobroma cacaoexon
exon-auto505617auto505617Theobroma cacaoexon
exon-auto505618auto505618Theobroma cacaoexon
exon-auto505619auto505619Theobroma cacaoexon
exon-auto505620auto505620Theobroma cacaoexon
exon-auto505621auto505621Theobroma cacaoexon
exon-auto505622auto505622Theobroma cacaoexon
exon-auto505623auto505623Theobroma cacaoexon
exon-auto505624auto505624Theobroma cacaoexon
exon-auto505625auto505625Theobroma cacaoexon
exon-auto505626auto505626Theobroma cacaoexon
exon-auto505627auto505627Theobroma cacaoexon
exon-auto505628auto505628Theobroma cacaoexon
exon-auto505629auto505629Theobroma cacaoexon
exon-auto505630auto505630Theobroma cacaoexon
exon-auto505631auto505631Theobroma cacaoexon
exon-auto505632auto505632Theobroma cacaoexon
exon-auto505633auto505633Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505634auto505634Theobroma cacaoCDS
CDS-auto505635auto505635Theobroma cacaoCDS
CDS-auto505636auto505636Theobroma cacaoCDS
CDS-auto505637auto505637Theobroma cacaoCDS
CDS-auto505638auto505638Theobroma cacaoCDS
CDS-auto505639auto505639Theobroma cacaoCDS
CDS-auto505640auto505640Theobroma cacaoCDS
CDS-auto505641auto505641Theobroma cacaoCDS
CDS-auto505642auto505642Theobroma cacaoCDS
CDS-auto505643auto505643Theobroma cacaoCDS
CDS-auto505644auto505644Theobroma cacaoCDS
CDS-auto505645auto505645Theobroma cacaoCDS
CDS-auto505646auto505646Theobroma cacaoCDS
CDS-auto505647auto505647Theobroma cacaoCDS
CDS-auto505648auto505648Theobroma cacaoCDS
CDS-auto505649auto505649Theobroma cacaoCDS
CDS-auto505650auto505650Theobroma cacaoCDS
CDS-auto505651auto505651Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010210.6 ID=Tc10v2_t010210.6|Name=Tc10v2_t010210.6|organism=Theobroma cacao|type=mRNA|length=1947bp
ATGGAGTACATTGCATTTTTGAAATCACTGCCGCACAAGATGGTTTTGCA
GGCTGCAAACACTCAGGAAGAGTCACAACGGATGACTGCAGTGCGGAAAG
CTTACCAGAAAGCTATTGTTACTCCAACTCATCACGTTGAACAGCTATGG
AAGGATTATGAAAATTTTGAAAATTCTGTCAGCCGCCAACTGGCTAAAGG
ACTTCTCTCTGAATATCAACCAAAATATAACAGTGCAAGGGCTGTGTATA
GGGAACGGAAGAAATATGTGGATGAAATTGATTGGAATATGCTTGCTGTA
CCACCAACCGACTCTTGCAAGGAAGAAATGCAATGGATGACATGGAAGAG
GCTTTTAGCCTTTGAGAAAGGAAATCCTCAAAGGATAGATAGTGCCTCCT
CCAACAAGCGAATTATATTCACTTATGAACAGTGTCTAATGTATTTATAC
CATTATCCTGATATATGGTATGATTATGCTACATGGCACGCAAAAAGTGG
CTCCATGGATGCTGCGACCAAGGTGTTTCAGCGAGCCTTGAAGGCTCTTC
CTGATTCAGAAATGCTAAATTATGCATATGCAGAGCTAGAGGAATCCCGT
GGAGCAATCCAATCTGCAAAGAAATTATATGAAAGCCTTTTGGGGAATGG
TGCTGACACTACAGCACTAGCACATATACAATTTATCCGCTTTATAAGAA
GGACTGAAGGTGTTGAAGCAGCTCGCAAGTATTTCTTAGATGCTCGTAAA
ACCCCTACTTGCACGTATCATGTTTATGTTGCTTATGCTTTGATGGCTTT
TTGTCTTGACAAGGACCCAAAGGTTGCTCACAATGTTTTTGAAGCAGGAT
TGAAACATTTTATGCATGAGCCTGCATACATCCTAGAATATGCAGATTTT
TTGTCTTGTTTGAATGATGACAGAAACATCCGGGCATTATTTGAGCGAGC
ATTAAGCTCACTACCACAAGAAGAATCTATTGAGGTCTGGAAACAATTCA
CCCAGTTTGAGCAAACTTATGGTGATCTAGCTAGCATGTTGAAGGTTGAG
CAAAGACGGAAGGAAGCTCTTTCTGGCAAAAGTGAAGAGGCTGCTTCTGT
GTTGGAGAGTTCTCTACAAGATGTTGTAGCACGCTACAGTTTCAAGGATC
TCTGGCCCTGTACTTCCAAGGATCTTGACCATTTGTCCCGACAAGAGTGG
CTCGCTAAAAACATTGGTAAGAAAGTGGAAAAGTCAGCTTTCTCTAATGG
ATCTGCGACAATAGATAAGAATCCATCCGCACCAACAAGCAATTCAACTG
CTTCTGTTAAAGTCCTTTATCCAGATATATCTCAGATGGTGGTTTATGAT
CCAAGGCAACATTCTGGAACTGCAGCTCCTCCAAACACAACAGCTCCTGC
AATTCTTGCTGCTTCCAACCCCTTGTCAAATCCCACAATTTCTGCAGTAG
ACAGTGGATCTGCCAATGCATTTGATGAAGTACTGAAAGCAACACCACCT
GCTTTGGTGGCATTTCTGACAAACTTGCCTGCTCTTGAAGGTCCGATACC
AAATGTAGACATTGTATTGTCCATATGTTTGCAGAGTAACTTACCAACTG
GTCAAACTAAGAAGTTAACTGCCCTCCCATCTCAAAGGACTACAGGTCCT
GCTCCTAGCACAAGTGATCTTTCTGGTTCAAGCAAGTCCCATCCCATCCC
TAGTAGCTCATCTTTCAGACCAAGGGACAGGCATCTTGGAAAAAGAAAGG
ATCTAGACAGTAAGTTTCCTGCCGTATTCATGGGGCAAGAGGAGGATGAA
ACTACAACAGTTCAAAGCCAACCACTGCCAAGAGACGTTTTCAGGATACG
GCAAATTCAGAAGGCTCGAGGAGGTTCTGCTTCACAGACTGGATCAGTAT
CTTATGGAAGTGCTCTTTCTGGGGATCTCTCCGGCAGTACTTACTAA
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protein sequence of Tc10v2_p010210.6

>Tc10v2_p010210.6 ID=Tc10v2_p010210.6|Name=Tc10v2_p010210.6|organism=Theobroma cacao|type=polypeptide|length=649bp
MEYIAFLKSLPHKMVLQAANTQEESQRMTAVRKAYQKAIVTPTHHVEQLW
KDYENFENSVSRQLAKGLLSEYQPKYNSARAVYRERKKYVDEIDWNMLAV
PPTDSCKEEMQWMTWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLY
HYPDIWYDYATWHAKSGSMDAATKVFQRALKALPDSEMLNYAYAELEESR
GAIQSAKKLYESLLGNGADTTALAHIQFIRFIRRTEGVEAARKYFLDARK
TPTCTYHVYVAYALMAFCLDKDPKVAHNVFEAGLKHFMHEPAYILEYADF
LSCLNDDRNIRALFERALSSLPQEESIEVWKQFTQFEQTYGDLASMLKVE
QRRKEALSGKSEEAASVLESSLQDVVARYSFKDLWPCTSKDLDHLSRQEW
LAKNIGKKVEKSAFSNGSATIDKNPSAPTSNSTASVKVLYPDISQMVVYD
PRQHSGTAAPPNTTAPAILAASNPLSNPTISAVDSGSANAFDEVLKATPP
ALVAFLTNLPALEGPIPNVDIVLSICLQSNLPTGQTKKLTALPSQRTTGP
APSTSDLSGSSKSHPIPSSSSFRPRDRHLGKRKDLDSKFPAVFMGQEEDE
TTTVQSQPLPRDVFRIRQIQKARGGSASQTGSVSYGSALSGDLSGSTY*
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