Tc10v2_t010100.1

Overview
NameTc10v2_t010100.1
Unique NameTc10v2_t010100.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length582
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productglutathione S-transferase zeta class, transcript variant X4
NoteGlutathione S-transferase zeta class
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586923
GenbankXM_018129581.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g010100Tc10v2_g010100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p010100.1Tc10v2_p010100.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto505054auto505054Theobroma cacaoexon
exon-auto505055auto505055Theobroma cacaoexon
exon-auto505056auto505056Theobroma cacaoexon
exon-auto505057auto505057Theobroma cacaoexon
exon-auto505058auto505058Theobroma cacaoexon
exon-auto505059auto505059Theobroma cacaoexon
exon-auto505060auto505060Theobroma cacaoexon
exon-auto505061auto505061Theobroma cacaoexon
exon-auto505062auto505062Theobroma cacaoexon
exon-auto505063auto505063Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto505064auto505064Theobroma cacaoCDS
CDS-auto505065auto505065Theobroma cacaoCDS
CDS-auto505066auto505066Theobroma cacaoCDS
CDS-auto505067auto505067Theobroma cacaoCDS
CDS-auto505068auto505068Theobroma cacaoCDS
CDS-auto505069auto505069Theobroma cacaoCDS
CDS-auto505070auto505070Theobroma cacaoCDS
CDS-auto505071auto505071Theobroma cacaoCDS
CDS-auto505072auto505072Theobroma cacaoCDS
CDS-auto505073auto505073Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t010100.1 ID=Tc10v2_t010100.1|Name=Tc10v2_t010100.1|organism=Theobroma cacao|type=mRNA|length=582bp
ATGGCACATGAGGAGAAGAAACTGAAGCTCTATTCTTACTGGAGGAGCTC
CTGCTCCTGCCGAATCCGGATTGCCCTCAACCTCAAAGGTCTGGAGTACC
AGTACATACCCGTTAACTTGCTCAAGGGGGAGCAATTCAGTCCTGAATTT
CAAAAGCTGAATCCCATTGGGTATGTGCCGGTGCTGGTGGATGGTGACAT
TGTCATTTCAGACTCTTTTGCCATTTTCATGTATCTGGAGGAGAAATACC
CTCAACATCCGCTGTTGCCATCTGATCTTCAAAAAAAGGCACTCAATTTC
CAGGCTGCAAATATTGTTTGCTCAAGCATACAGCCTCTTCAGAATCTAGC
TAAATACATTGAGGAAAAAGCAAGTCCAGATGAGAAAATTCCTTGGGCAA
AACGTCATATTGAGAAGGGCTTTGAAGCACTTGAGAAGTTGTTAAAGGAC
CATGCTGGAATATATGCAACTGGAGATGAAGTTTTCATGGCTGATCTGTT
TCTAGCACCACAGGTTCATGCTGGGATTAAAAGATTCAATGTTGACATGG
TTCCATGGCAAACTCATCCACAAAAAGCATAA
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protein sequence of Tc10v2_p010100.1

>Tc10v2_p010100.1 ID=Tc10v2_p010100.1|Name=Tc10v2_p010100.1|organism=Theobroma cacao|type=polypeptide|length=194bp
MAHEEKKLKLYSYWRSSCSCRIRIALNLKGLEYQYIPVNLLKGEQFSPEF
QKLNPIGYVPVLVDGDIVISDSFAIFMYLEEKYPQHPLLPSDLQKKALNF
QAANIVCSSIQPLQNLAKYIEEKASPDEKIPWAKRHIEKGFEALEKLLKD
HAGIYATGDEVFMADLFLAPQVHAGIKRFNVDMVPWQTHPQKA*
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