Tc10v2_t008620.1

Overview
NameTc10v2_t008620.1
Unique NameTc10v2_t008620.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2274
Properties
Property NameValue
NoteSerine/threonine-protein kinase CTR1
Model evidenceSupporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productserine/threonine-protein kinase CTR1, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586721
GenbankXM_018128945.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g008620Tc10v2_g008620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p008620.1Tc10v2_p008620.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto502612auto502612Theobroma cacaoexon
exon-auto502613auto502613Theobroma cacaoexon
exon-auto502614auto502614Theobroma cacaoexon
exon-auto502615auto502615Theobroma cacaoexon
exon-auto502616auto502616Theobroma cacaoexon
exon-auto502617auto502617Theobroma cacaoexon
exon-auto502618auto502618Theobroma cacaoexon
exon-auto502619auto502619Theobroma cacaoexon
exon-auto502620auto502620Theobroma cacaoexon
exon-auto502621auto502621Theobroma cacaoexon
exon-auto502622auto502622Theobroma cacaoexon
exon-auto502623auto502623Theobroma cacaoexon
exon-auto502624auto502624Theobroma cacaoexon
exon-auto502625auto502625Theobroma cacaoexon
exon-auto502626auto502626Theobroma cacaoexon
exon-auto502627auto502627Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto502628auto502628Theobroma cacaoCDS
CDS-auto502629auto502629Theobroma cacaoCDS
CDS-auto502630auto502630Theobroma cacaoCDS
CDS-auto502631auto502631Theobroma cacaoCDS
CDS-auto502632auto502632Theobroma cacaoCDS
CDS-auto502633auto502633Theobroma cacaoCDS
CDS-auto502634auto502634Theobroma cacaoCDS
CDS-auto502635auto502635Theobroma cacaoCDS
CDS-auto502636auto502636Theobroma cacaoCDS
CDS-auto502637auto502637Theobroma cacaoCDS
CDS-auto502638auto502638Theobroma cacaoCDS
CDS-auto502639auto502639Theobroma cacaoCDS
CDS-auto502640auto502640Theobroma cacaoCDS
CDS-auto502641auto502641Theobroma cacaoCDS
CDS-auto502642auto502642Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t008620.1 ID=Tc10v2_t008620.1|Name=Tc10v2_t008620.1|organism=Theobroma cacao|type=mRNA|length=2274bp
ATGATGTATGGGAATCAATCTGATAGCTGTTACGGATTACAGGTCCAAGT
GAATGGGAATTTAATAGCGACTGGTTTTGGGCAGCAGGAGCAGCAGCAGA
TGATGGCATCCTTTAATAAGAGCTGGGCTCAGCAGACTGAGGAGAGTTAC
CAGTTGCAGTTGACACTGGCTTTGCGGGTTTCTTCACAGGCTGCTTCTGC
TGCTGATTCTTACTTCTTGGATTTCAATTCTGATGCTAATAAGAATAATA
GAAATGGCTCTTTTCCTCTGACTTCTCAGGATGTGTCTCATCGATTCTGG
GTAAATGGCAGTCTGTCTTACTTTGATAGAATTTTAGATGGGTTTTACCT
AATCCATGGAATGGACCCTTATGCATGGACCATAAGTGCTGACCAAGGAG
AGATTGGCCAGATGCCATCGTTTGACTCATTGAAGGCCATTGATCCTCAT
GATGATTTGTCAATTAAAGTTGTTCTGATTGATAAATTGAGGGATCCTAG
ATTGAGGGAACTTCAAAATTGTGTTCTCAAAATTTCTAGTAGCTGGGTCA
GCACAAAAGATGTAATTGATCAGCTTGCACGTCTTGTCTGTAACCAAATG
GGGGATGCAGCCTCTTCTGAAGAAGGTGTTTATAGACAATGGAAGGAGTG
CACCAAAGTTCTGAAGGACTGCCTAGGCTCTATTGTGTTTCCAATTGGAA
GCCTATCTTTTGGCCTTTGTGTCCATCGTGCCTTACTGTTTAAGGTATTA
GCAGACTTGGTTAACCTACCATGCCGAATCACTAAGGGCTGTAAATATTG
CCAGAGGGAAGATGCTTCATCCTGTCTTGTGCAGTTGGGTGTTGACAGGG
AATATTTGGTTGATATGTTTGCAGAGCCGGGAGCCTTAAGCCGGCCAGAT
TCCTCACTAAATGGTACATCTTCAATTTTGGTTTCTTCACCGCTATGTCA
TCCAAGATTTAAACAGGTTGAAACTGCTACAAGCATCAGGAAATTGTCCA
AGCTCTATTTTGTTGATGATCAATCATGTAAACACACATTTGATGATGCT
TCCTCAGATAACGCTAGCAATCAAGATGAGCAAACTGGTCCACAGCTTAG
TAAGGCATTTGATATGAATTACTTTAACAAGAACAAGCTTGTTTCCACCT
TAATCAACAACAATGGATCTACTCTGTCACCTCTGCACCAGAGAACCGCA
TGGAATATCTACTGTGATAAAGATCTTCAGATGCAAAACTCATCAAATTT
GATACCAAAGGCCATTGCCTCATCACATTTGGTCAGAAGTCCTCTTCTGC
CAAGTTCTGTCCCATCTGGTATGCAGAATGATGCTTGTCAAGCTTTAGCA
TTCTCTGATCCAAGGCAATGTACTGCGAATTCTGTGCTGTTCAAGCAATC
AGATCAGCCAGTAATGAGCATTGACCATGGAGATTTGGATATTCCTTGGA
GTGAACTTGTTTTAAAAGAAAAAATTGGAGCAGGTTCTTTTGGAACTGTC
CATCGTGCTGAATTGCGTGGTTGTGAAGTTGCTGTCAAAATTCTCTTGGA
ACAAGGTTTCCATGCAGAACGCTTCAGGGAATTTTTAAGGGAGGTTGCCA
TCATGAAACGTTTACGGCACCCTAACATTGTTCTTTTTATGGGTGCTGTT
ACTCAACCGCCAAAGTTGTCCATTGTTACCGAATACTTGTCAAGAGGCAG
TCTATTTAGACTTTTGCAGATGCCTGATGCTGCATTGGTATTAGATGAGA
GGTGTCGCTTGAATATGGCATTAGATGTGGCAAGGGGAATGAATTATCTT
CATCAACTTAAACCTCCCATTGTTCATCGGGACTTAAAGTCCCCAAATCT
TTTGGTAGACAGTACTTATACAGTTAAGGTCTGCGATTTTGGTCTTTCAC
GTTCAAAGGCAAACACATTTCTTTCGTCAAAAACAGCTGCTGGAACTCCG
GAATGGATGGCACCCGAAGTTCTCTGCGATGAGCCATCGAATGAGAAATC
TGATGTTTACAGCTTTGGAGTAGTTCTATGGGAACTTGTGACCTTGCAAC
AACCATGGAAGAATTTAAATCCACCACAGGTTGTAGCAGCTGTAGGTTTT
AAAGGTAAAAGGCTGGAGATCCCAAGCAATGTAAACCCAGTTGTGGCTTC
CTTGATTGAACTTTGTTGGGCTAACGATACTTCCAAACGCCCTTCATTCT
CCTATGTCATGGAATGTTTGTACCAAGTGATCATAAATACTGCATCTCAA
AAATTTCATCGACAAATTTCATGA
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protein sequence of Tc10v2_p008620.1

>Tc10v2_p008620.1 ID=Tc10v2_p008620.1|Name=Tc10v2_p008620.1|organism=Theobroma cacao|type=polypeptide|length=758bp
MMYGNQSDSCYGLQVQVNGNLIATGFGQQEQQQMMASFNKSWAQQTEESY
QLQLTLALRVSSQAASAADSYFLDFNSDANKNNRNGSFPLTSQDVSHRFW
VNGSLSYFDRILDGFYLIHGMDPYAWTISADQGEIGQMPSFDSLKAIDPH
DDLSIKVVLIDKLRDPRLRELQNCVLKISSSWVSTKDVIDQLARLVCNQM
GDAASSEEGVYRQWKECTKVLKDCLGSIVFPIGSLSFGLCVHRALLFKVL
ADLVNLPCRITKGCKYCQREDASSCLVQLGVDREYLVDMFAEPGALSRPD
SSLNGTSSILVSSPLCHPRFKQVETATSIRKLSKLYFVDDQSCKHTFDDA
SSDNASNQDEQTGPQLSKAFDMNYFNKNKLVSTLINNNGSTLSPLHQRTA
WNIYCDKDLQMQNSSNLIPKAIASSHLVRSPLLPSSVPSGMQNDACQALA
FSDPRQCTANSVLFKQSDQPVMSIDHGDLDIPWSELVLKEKIGAGSFGTV
HRAELRGCEVAVKILLEQGFHAERFREFLREVAIMKRLRHPNIVLFMGAV
TQPPKLSIVTEYLSRGSLFRLLQMPDAALVLDERCRLNMALDVARGMNYL
HQLKPPIVHRDLKSPNLLVDSTYTVKVCDFGLSRSKANTFLSSKTAAGTP
EWMAPEVLCDEPSNEKSDVYSFGVVLWELVTLQQPWKNLNPPQVVAAVGF
KGKRLEIPSNVNPVVASLIELCWANDTSKRPSFSYVMECLYQVIINTASQ
KFHRQIS*
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