Tc10v2_t004070.1

Overview
NameTc10v2_t004070.1
Unique NameTc10v2_t004070.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1257
Properties
Property NameValue
NotePutative 28 kDa ribonucleoprotein, chloroplastic
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productprotein gar2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18586154
GenbankXM_018129511.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g004070Tc10v2_g004070Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p004070.1Tc10v2_p004070.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto493418auto493418Theobroma cacaoexon
exon-auto493419auto493419Theobroma cacaoexon
exon-auto493420auto493420Theobroma cacaoexon
exon-auto493421auto493421Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto493422auto493422Theobroma cacaoCDS
CDS-auto493423auto493423Theobroma cacaoCDS
CDS-auto493424auto493424Theobroma cacaoCDS
CDS-auto493425auto493425Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t004070.1 ID=Tc10v2_t004070.1|Name=Tc10v2_t004070.1|organism=Theobroma cacao|type=mRNA|length=1257bp
ATGGTATTATCAAACAAGAAGCTTAAGCAGAAGCTTAGGGCAGAACTGTT
GGCAAAAAAAGTGGCCGAACCCGACGCTGATATCAAAAACCCAGATTCAA
ATTCGGAGGCCCAGTCCGTGAAATCTCTCCTAGACTCTGTAACTCGGAAA
CCCAGATTGTCGAAGCGAGAAAAAAGAAGACAAACCCTTTCTTTTTCAAA
AGGGTCGAACAAGGAAACTGAGGGAAAGGGAGAGGATGTTGAAGAAGTAG
AAGAAGAAGAAAAGAAGAAAAAAAAGAAGAGGAAGAGAGAGGAGGACGTG
AAGGAGGAGAAGGGAAGGAATAAGGAGACAAAGAAAAAGAAGAAGAACAA
TAAGAATAAGAAGGGGAAGAATGTAAGTGAAGAGCAAGGAGTTTTGCAGG
TTGAGAATGGGACTGAAAGCCAGGTGAGGGAGGATGCTGCCACAAAAGTA
TATGTTGGAGGCATTCCATATCGCTATACCGAGGATGATATTCGATATTA
TTTTGAAGGTTGTGGTACTATACTTGATGTTGATTGTATGAAGTTTCCAG
ACACTGGGAAGTTTAGAGGAATTGCAATTATTAGTTTCAAGACAGAAGCT
GCAGTGAAAGAAGCCTTGGCTCTTGACAGAGCTGAAATGGGTGGAATGCA
GCTAACAATTCAGCCCTACAAATCCACACGAGCCAATAATAAAGTAACTG
GTTTTTCCCCAAAAATGGTGGAGGGCTACAACAGAATATATGTTGGAAAT
TTGTCATGGGATATAACTGAGGATGATCTTAGGAAGCTTTTCTCAGATTG
TGATGTATCATCTATACGCTTTGGCATGGACAAGGAAACCGGAGAATTCC
GAGGCTATGCCCATGTGGATTTCTCTGATAGTGTCTCAGTAGCCATGGCA
TTAAAGTTAGACCAAGAAATTGTGTGCGGTAGACCTGTCAAGATAAGTTG
TGCAGTTCCTAAGAATGAAGTAAAAAGTCAATCAAGATCTCATCCTACAA
GAACTGAAGTCCCTAAAAGTAATGAAGCACCTGCAGTTAAAGAAGCACCA
GCAATTGAAGAAGCACCTGCAAGTAATGAAGCACTTACAGGTAATGAAGC
GCCTACAATGGGTAATAAAGCTGATAATGGTGGTTCAACTGTCAGCAGCG
GTAAGTTGAGGCGAAGGACATGCTATGAGTGTGGACAGAAGGGCCATATT
TCTTCTGCTTGCCCAAATAAGAAAACTGCAGATACGACCAATACAAACAC
AAATTAA
back to top

protein sequence of Tc10v2_p004070.1

>Tc10v2_p004070.1 ID=Tc10v2_p004070.1|Name=Tc10v2_p004070.1|organism=Theobroma cacao|type=polypeptide|length=419bp
MVLSNKKLKQKLRAELLAKKVAEPDADIKNPDSNSEAQSVKSLLDSVTRK
PRLSKREKRRQTLSFSKGSNKETEGKGEDVEEVEEEEKKKKKKRKREEDV
KEEKGRNKETKKKKKNNKNKKGKNVSEEQGVLQVENGTESQVREDAATKV
YVGGIPYRYTEDDIRYYFEGCGTILDVDCMKFPDTGKFRGIAIISFKTEA
AVKEALALDRAEMGGMQLTIQPYKSTRANNKVTGFSPKMVEGYNRIYVGN
LSWDITEDDLRKLFSDCDVSSIRFGMDKETGEFRGYAHVDFSDSVSVAMA
LKLDQEIVCGRPVKISCAVPKNEVKSQSRSHPTRTEVPKSNEAPAVKEAP
AIEEAPASNEALTGNEAPTMGNKADNGGSTVSSGKLRRRTCYECGQKGHI
SSACPNKKTADTTNTNTN*
back to top