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Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 10 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic, transcript variant X2 |
Note | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc09v2_t028620.2 ID=Tc09v2_t028620.2|Name=Tc09v2_t028620.2|organism=Theobroma cacao|type=mRNA|length=2223bp ATGGCGACTGGAGCTGTACCAGCTTCCTTTTCGGGTTTGAAGGATAGGGA CTCAAGCTTAGGATTTGCAAAAAGTATGGATTTTGTCAGAGTTTGTGATT TGAAGAGAATTAAGTCTGGTAGAACAAGAATATCCGTGATTAGGAATCAG AATCCTGGTCCAGATATTGCTGAACTCCAGCCTGCATCAGAAGGGAGCCC TCTGTTAGTTCCCAGGCAGAAGTATTGTGAATCCATACACAAAACCGTCA GGAGAAAGACACGGACAGTAATGGTTGGAAATGTGGCTCTTGGTAGCGAG CATCCTATAAGGATTCAAACAATGACTACAACTGACACTAAGGATGTTGC TGGGACAGTGGAGCAGGTAATGAGAATAGCAGACAAGGGAGCAGATATTG TACGGATAACTGTTCAAGGGAAGAGAGAGGCTGATGCATGTTTTGAAATA AAAAACACTTTGGTACAGAAAAATTACAATATACCGCTGGTGGCAGATAT CCATTTTGCTCCTTCAGTAGCATTGCGAGTTGCTGAGTGCTTTGACAAAA TTCGAGTCAACCCAGGAAACTTTGCTGATAGACGGGCTCAGTTTGAGACG ATAGAATATACAGATGAGGAGTATCAGAAAGAACTTGAGCACATTGAGAA GGTTTTTACTCCATTGGTTGAAAAATGTAAGAAGTATGGAAGGGCGATGC GTATTGGCACCAACCATGGGAGCCTTTCTGACCGCATAATGAGCTACTAC GGAGATTCTCCTAGGGGAATGGTTGAATCCGCATTTGAGTTTGCTAAGAT ATGTAGAAAGTTGGACTACCATAATTTTGTCTTTTCAATGAAAGCAAGCA ATCCAGTTGTCATGGTCCAGGCATACCGTCTGCTTGTGGCTGAAATGTAT GTTCATGGCTGGGACTATCCATTACATTTGGGAGTCACTGAAGCTGGAGA AGGTGAGGATGGGAGGATGAAATCTGCGATTGGCATTGGGACCCTCCTTC AGGATGGTTTAGGTGACACAATCAGGGTTTCACTTACAGAGCCACCAGAG GAGGAAATAGATCCCTGCAGAAGAATGGCTAACCTTGGTATGAGAGCTGC TCAACTCCAGAAAGGGGTGGCACCATTTGAGGAAAAGCACAGGCATTACT TTGATTTCCAGCGTCGATCTGGTCAATTGCCAACGCAAAAAGAGGGCGAA GAGGTGGATTACAGAGGTGTCTTGCATCGCGATGGCTCTGTTCTTATGTC AGTTTCCCTGGATCAGTTGAAGGCACCGGAACTCTTGTACAAGTCACTTG CATTAAAGCTGGTTGTTGGCATGCCATTTAAGGACTTGGCAACAGTGGAC TCAATCATACTGAGGGAGCTTCCACCAGTAGATGACATTGATGCCCGGCT AGCTCTTAAAAGGTTGATAGACATAAGCATGGGGGTCATTACTCCTTTAT CAGAGCAGCTAACAAAGCCATTGCCTAATGCTATGGCTCTGGTAAACCTC AAGGAACTATCAACTGGAGCTTACAAGCTTTTGCCAGAAGGTACACGCTT GGTTGTATCTGTACGTGGTGACGAGCCTTATGAAGAGTTGGAAATCCTCA AAGGCATTGATGCTACAATGCTTCTTCATGACATACCCTACAATGAAGAT AAAATCGGCAGAGTGCATGCAGCAAGGAGGTTGTTTGAGTATCTTTCAGA GAATGCGTTGGATTTCCCTGTAATCCACCACATTCAGTTTCCAAATGGGA TTCACAGGGATGACTTGGTCATTAATGCTGGCACCAATGCTGGAGCCCTT CTGGTGGATGGACTTGGAGATGGTGTCTTGTTAGAAGCCCCAGACCAGGA TTTCGACTTCCTCAGGAATACTTCTTTCAACTTACTACAGGGCTGTAGAA TGAGGAATACCAAGACAGAGTATGTCTCATGCCCATCTTGTGGCAGAACT TTGTTCGACCTTCAAGAAATAAGTGCACAAATACGAGAAAAGACATCACA CTTGCCTGGTGTTTCGATTGCAATCATGGGTTGCATCGTCAATGGTCCTG GGGAAATGGCTGATGCAGATTTCGGATACGTAGGTGGTGCTCCTGGAAAA ATTGACCTCTATGTTGGCAAGACTGTTGTGCAGCGTGGAATTGCAATGGA GCATGCAACCGATGCTCTGATCCAATTAATAAAAGATCATGGCCGCTGGG TAGACCCTCCTGCCGAAGAATAA back to topprotein sequence of Tc09v2_p028620.2 >Tc09v2_p028620.2 ID=Tc09v2_p028620.2|Name=Tc09v2_p028620.2|organism=Theobroma cacao|type=polypeptide|length=741bp
MATGAVPASFSGLKDRDSSLGFAKSMDFVRVCDLKRIKSGRTRISVIRNQ NPGPDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSE HPIRIQTMTTTDTKDVAGTVEQVMRIADKGADIVRITVQGKREADACFEI KNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFET IEYTDEEYQKELEHIEKVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY GDSPRGMVESAFEFAKICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMY VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE EEIDPCRRMANLGMRAAQLQKGVAPFEEKHRHYFDFQRRSGQLPTQKEGE EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLALKLVVGMPFKDLATVD SIILRELPPVDDIDARLALKRLIDISMGVITPLSEQLTKPLPNAMALVNL KELSTGAYKLLPEGTRLVVSVRGDEPYEELEILKGIDATMLLHDIPYNED KIGRVHAARRLFEYLSENALDFPVIHHIQFPNGIHRDDLVINAGTNAGAL LVDGLGDGVLLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRT LFDLQEISAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGK IDLYVGKTVVQRGIAMEHATDALIQLIKDHGRWVDPPAEE* back to top
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