Tc09v2_t028620.2

Overview
NameTc09v2_t028620.2
Unique NameTc09v2_t028620.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2223
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic, transcript variant X2
Note4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590867
GenbankXM_007016661.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g028620Tc09v2_g028620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p028620.2Tc09v2_p028620.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto481082auto481082Theobroma cacaoexon
exon-auto481083auto481083Theobroma cacaoexon
exon-auto481084auto481084Theobroma cacaoexon
exon-auto481085auto481085Theobroma cacaoexon
exon-auto481086auto481086Theobroma cacaoexon
exon-auto481087auto481087Theobroma cacaoexon
exon-auto481088auto481088Theobroma cacaoexon
exon-auto481089auto481089Theobroma cacaoexon
exon-auto481090auto481090Theobroma cacaoexon
exon-auto481091auto481091Theobroma cacaoexon
exon-auto481092auto481092Theobroma cacaoexon
exon-auto481093auto481093Theobroma cacaoexon
exon-auto481094auto481094Theobroma cacaoexon
exon-auto481095auto481095Theobroma cacaoexon
exon-auto481096auto481096Theobroma cacaoexon
exon-auto481097auto481097Theobroma cacaoexon
exon-auto481098auto481098Theobroma cacaoexon
exon-auto481099auto481099Theobroma cacaoexon
exon-auto481100auto481100Theobroma cacaoexon
exon-auto481101auto481101Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto481102auto481102Theobroma cacaoCDS
CDS-auto481103auto481103Theobroma cacaoCDS
CDS-auto481104auto481104Theobroma cacaoCDS
CDS-auto481105auto481105Theobroma cacaoCDS
CDS-auto481106auto481106Theobroma cacaoCDS
CDS-auto481107auto481107Theobroma cacaoCDS
CDS-auto481108auto481108Theobroma cacaoCDS
CDS-auto481109auto481109Theobroma cacaoCDS
CDS-auto481110auto481110Theobroma cacaoCDS
CDS-auto481111auto481111Theobroma cacaoCDS
CDS-auto481112auto481112Theobroma cacaoCDS
CDS-auto481113auto481113Theobroma cacaoCDS
CDS-auto481114auto481114Theobroma cacaoCDS
CDS-auto481115auto481115Theobroma cacaoCDS
CDS-auto481116auto481116Theobroma cacaoCDS
CDS-auto481117auto481117Theobroma cacaoCDS
CDS-auto481118auto481118Theobroma cacaoCDS
CDS-auto481119auto481119Theobroma cacaoCDS
CDS-auto481120auto481120Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t028620.2 ID=Tc09v2_t028620.2|Name=Tc09v2_t028620.2|organism=Theobroma cacao|type=mRNA|length=2223bp
ATGGCGACTGGAGCTGTACCAGCTTCCTTTTCGGGTTTGAAGGATAGGGA
CTCAAGCTTAGGATTTGCAAAAAGTATGGATTTTGTCAGAGTTTGTGATT
TGAAGAGAATTAAGTCTGGTAGAACAAGAATATCCGTGATTAGGAATCAG
AATCCTGGTCCAGATATTGCTGAACTCCAGCCTGCATCAGAAGGGAGCCC
TCTGTTAGTTCCCAGGCAGAAGTATTGTGAATCCATACACAAAACCGTCA
GGAGAAAGACACGGACAGTAATGGTTGGAAATGTGGCTCTTGGTAGCGAG
CATCCTATAAGGATTCAAACAATGACTACAACTGACACTAAGGATGTTGC
TGGGACAGTGGAGCAGGTAATGAGAATAGCAGACAAGGGAGCAGATATTG
TACGGATAACTGTTCAAGGGAAGAGAGAGGCTGATGCATGTTTTGAAATA
AAAAACACTTTGGTACAGAAAAATTACAATATACCGCTGGTGGCAGATAT
CCATTTTGCTCCTTCAGTAGCATTGCGAGTTGCTGAGTGCTTTGACAAAA
TTCGAGTCAACCCAGGAAACTTTGCTGATAGACGGGCTCAGTTTGAGACG
ATAGAATATACAGATGAGGAGTATCAGAAAGAACTTGAGCACATTGAGAA
GGTTTTTACTCCATTGGTTGAAAAATGTAAGAAGTATGGAAGGGCGATGC
GTATTGGCACCAACCATGGGAGCCTTTCTGACCGCATAATGAGCTACTAC
GGAGATTCTCCTAGGGGAATGGTTGAATCCGCATTTGAGTTTGCTAAGAT
ATGTAGAAAGTTGGACTACCATAATTTTGTCTTTTCAATGAAAGCAAGCA
ATCCAGTTGTCATGGTCCAGGCATACCGTCTGCTTGTGGCTGAAATGTAT
GTTCATGGCTGGGACTATCCATTACATTTGGGAGTCACTGAAGCTGGAGA
AGGTGAGGATGGGAGGATGAAATCTGCGATTGGCATTGGGACCCTCCTTC
AGGATGGTTTAGGTGACACAATCAGGGTTTCACTTACAGAGCCACCAGAG
GAGGAAATAGATCCCTGCAGAAGAATGGCTAACCTTGGTATGAGAGCTGC
TCAACTCCAGAAAGGGGTGGCACCATTTGAGGAAAAGCACAGGCATTACT
TTGATTTCCAGCGTCGATCTGGTCAATTGCCAACGCAAAAAGAGGGCGAA
GAGGTGGATTACAGAGGTGTCTTGCATCGCGATGGCTCTGTTCTTATGTC
AGTTTCCCTGGATCAGTTGAAGGCACCGGAACTCTTGTACAAGTCACTTG
CATTAAAGCTGGTTGTTGGCATGCCATTTAAGGACTTGGCAACAGTGGAC
TCAATCATACTGAGGGAGCTTCCACCAGTAGATGACATTGATGCCCGGCT
AGCTCTTAAAAGGTTGATAGACATAAGCATGGGGGTCATTACTCCTTTAT
CAGAGCAGCTAACAAAGCCATTGCCTAATGCTATGGCTCTGGTAAACCTC
AAGGAACTATCAACTGGAGCTTACAAGCTTTTGCCAGAAGGTACACGCTT
GGTTGTATCTGTACGTGGTGACGAGCCTTATGAAGAGTTGGAAATCCTCA
AAGGCATTGATGCTACAATGCTTCTTCATGACATACCCTACAATGAAGAT
AAAATCGGCAGAGTGCATGCAGCAAGGAGGTTGTTTGAGTATCTTTCAGA
GAATGCGTTGGATTTCCCTGTAATCCACCACATTCAGTTTCCAAATGGGA
TTCACAGGGATGACTTGGTCATTAATGCTGGCACCAATGCTGGAGCCCTT
CTGGTGGATGGACTTGGAGATGGTGTCTTGTTAGAAGCCCCAGACCAGGA
TTTCGACTTCCTCAGGAATACTTCTTTCAACTTACTACAGGGCTGTAGAA
TGAGGAATACCAAGACAGAGTATGTCTCATGCCCATCTTGTGGCAGAACT
TTGTTCGACCTTCAAGAAATAAGTGCACAAATACGAGAAAAGACATCACA
CTTGCCTGGTGTTTCGATTGCAATCATGGGTTGCATCGTCAATGGTCCTG
GGGAAATGGCTGATGCAGATTTCGGATACGTAGGTGGTGCTCCTGGAAAA
ATTGACCTCTATGTTGGCAAGACTGTTGTGCAGCGTGGAATTGCAATGGA
GCATGCAACCGATGCTCTGATCCAATTAATAAAAGATCATGGCCGCTGGG
TAGACCCTCCTGCCGAAGAATAA
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protein sequence of Tc09v2_p028620.2

>Tc09v2_p028620.2 ID=Tc09v2_p028620.2|Name=Tc09v2_p028620.2|organism=Theobroma cacao|type=polypeptide|length=741bp
MATGAVPASFSGLKDRDSSLGFAKSMDFVRVCDLKRIKSGRTRISVIRNQ
NPGPDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSE
HPIRIQTMTTTDTKDVAGTVEQVMRIADKGADIVRITVQGKREADACFEI
KNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFET
IEYTDEEYQKELEHIEKVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY
GDSPRGMVESAFEFAKICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMY
VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE
EEIDPCRRMANLGMRAAQLQKGVAPFEEKHRHYFDFQRRSGQLPTQKEGE
EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLALKLVVGMPFKDLATVD
SIILRELPPVDDIDARLALKRLIDISMGVITPLSEQLTKPLPNAMALVNL
KELSTGAYKLLPEGTRLVVSVRGDEPYEELEILKGIDATMLLHDIPYNED
KIGRVHAARRLFEYLSENALDFPVIHHIQFPNGIHRDDLVINAGTNAGAL
LVDGLGDGVLLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRT
LFDLQEISAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGK
IDLYVGKTVVQRGIAMEHATDALIQLIKDHGRWVDPPAEE*
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