Tc09v2_t028620.1

Overview
NameTc09v2_t028620.1
Unique NameTc09v2_t028620.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2223
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic, transcript variant X1
Note4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590867
GenbankXM_007016662.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g028620Tc09v2_g028620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p028620.1Tc09v2_p028620.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto481041auto481041Theobroma cacaoexon
exon-auto481042auto481042Theobroma cacaoexon
exon-auto481043auto481043Theobroma cacaoexon
exon-auto481044auto481044Theobroma cacaoexon
exon-auto481045auto481045Theobroma cacaoexon
exon-auto481046auto481046Theobroma cacaoexon
exon-auto481047auto481047Theobroma cacaoexon
exon-auto481048auto481048Theobroma cacaoexon
exon-auto481049auto481049Theobroma cacaoexon
exon-auto481050auto481050Theobroma cacaoexon
exon-auto481051auto481051Theobroma cacaoexon
exon-auto481052auto481052Theobroma cacaoexon
exon-auto481053auto481053Theobroma cacaoexon
exon-auto481054auto481054Theobroma cacaoexon
exon-auto481055auto481055Theobroma cacaoexon
exon-auto481056auto481056Theobroma cacaoexon
exon-auto481057auto481057Theobroma cacaoexon
exon-auto481058auto481058Theobroma cacaoexon
exon-auto481059auto481059Theobroma cacaoexon
exon-auto481060auto481060Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto481061auto481061Theobroma cacaoCDS
CDS-auto481062auto481062Theobroma cacaoCDS
CDS-auto481063auto481063Theobroma cacaoCDS
CDS-auto481064auto481064Theobroma cacaoCDS
CDS-auto481065auto481065Theobroma cacaoCDS
CDS-auto481066auto481066Theobroma cacaoCDS
CDS-auto481067auto481067Theobroma cacaoCDS
CDS-auto481068auto481068Theobroma cacaoCDS
CDS-auto481069auto481069Theobroma cacaoCDS
CDS-auto481070auto481070Theobroma cacaoCDS
CDS-auto481071auto481071Theobroma cacaoCDS
CDS-auto481072auto481072Theobroma cacaoCDS
CDS-auto481073auto481073Theobroma cacaoCDS
CDS-auto481074auto481074Theobroma cacaoCDS
CDS-auto481075auto481075Theobroma cacaoCDS
CDS-auto481076auto481076Theobroma cacaoCDS
CDS-auto481077auto481077Theobroma cacaoCDS
CDS-auto481078auto481078Theobroma cacaoCDS
CDS-auto481079auto481079Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t028620.1 ID=Tc09v2_t028620.1|Name=Tc09v2_t028620.1|organism=Theobroma cacao|type=mRNA|length=2223bp
ATGGCGACTGGAGCTGTACCAGCTTCCTTTTCGGGTTTGAAGGATAGGGA
CTCAAGCTTAGGATTTGCAAAAAGTATGGATTTTGTCAGAGTTTGTGATT
TGAAGAGAATTAAGTCTGGTAGAACAAGAATATCCGTGATTAGGAATCAG
AATCCTGGTCCAGATATTGCTGAACTCCAGCCTGCATCAGAAGGGAGCCC
TCTGTTAGTTCCCAGGCAGAAGTATTGTGAATCCATACACAAAACCGTCA
GGAGAAAGACACGGACAGTAATGGTTGGAAATGTGGCTCTTGGTAGCGAG
CATCCTATAAGGATTCAAACAATGACTACAACTGACACTAAGGATGTTGC
TGGGACAGTGGAGCAGGTAATGAGAATAGCAGACAAGGGAGCAGATATTG
TACGGATAACTGTTCAAGGGAAGAGAGAGGCTGATGCATGTTTTGAAATA
AAAAACACTTTGGTACAGAAAAATTACAATATACCGCTGGTGGCAGATAT
CCATTTTGCTCCTTCAGTAGCATTGCGAGTTGCTGAGTGCTTTGACAAAA
TTCGAGTCAACCCAGGAAACTTTGCTGATAGACGGGCTCAGTTTGAGACG
ATAGAATATACAGATGAGGAGTATCAGAAAGAACTTGAGCACATTGAGAA
GGTTTTTACTCCATTGGTTGAAAAATGTAAGAAGTATGGAAGGGCGATGC
GTATTGGCACCAACCATGGGAGCCTTTCTGACCGCATAATGAGCTACTAC
GGAGATTCTCCTAGGGGAATGGTTGAATCCGCATTTGAGTTTGCTAAGAT
ATGTAGAAAGTTGGACTACCATAATTTTGTCTTTTCAATGAAAGCAAGCA
ATCCAGTTGTCATGGTCCAGGCATACCGTCTGCTTGTGGCTGAAATGTAT
GTTCATGGCTGGGACTATCCATTACATTTGGGAGTCACTGAAGCTGGAGA
AGGTGAGGATGGGAGGATGAAATCTGCGATTGGCATTGGGACCCTCCTTC
AGGATGGTTTAGGTGACACAATCAGGGTTTCACTTACAGAGCCACCAGAG
GAGGAAATAGATCCCTGCAGAAGAATGGCTAACCTTGGTATGAGAGCTGC
TCAACTCCAGAAAGGGGTGGCACCATTTGAGGAAAAGCACAGGCATTACT
TTGATTTCCAGCGTCGATCTGGTCAATTGCCAACGCAAAAAGAGGGCGAA
GAGGTGGATTACAGAGGTGTCTTGCATCGCGATGGCTCTGTTCTTATGTC
AGTTTCCCTGGATCAGTTGAAGGCACCGGAACTCTTGTACAAGTCACTTG
CATTAAAGCTGGTTGTTGGCATGCCATTTAAGGACTTGGCAACAGTGGAC
TCAATCATACTGAGGGAGCTTCCACCAGTAGATGACATTGATGCCCGGCT
AGCTCTTAAAAGGTTGATAGACATAAGCATGGGGGTCATTACTCCTTTAT
CAGAGCAGCTAACAAAGCCATTGCCTAATGCTATGGCTCTGGTAAACCTC
AAGGAACTATCAACTGGAGCTTACAAGCTTTTGCCAGAAGGTACACGCTT
GGTTGTATCTGTACGTGGTGACGAGCCTTATGAAGAGTTGGAAATCCTCA
AAGGCATTGATGCTACAATGCTTCTTCATGACATACCCTACAATGAAGAT
AAAATCGGCAGAGTGCATGCAGCAAGGAGGTTGTTTGAGTATCTTTCAGA
GAATGCGTTGGATTTCCCTGTAATCCACCACATTCAGTTTCCAAATGGGA
TTCACAGGGATGACTTGGTCATTAATGCTGGCACCAATGCTGGAGCCCTT
CTGGTGGATGGACTTGGAGATGGTGTCTTGTTAGAAGCCCCAGACCAGGA
TTTCGACTTCCTCAGGAATACTTCTTTCAACTTACTACAGGGCTGTAGAA
TGAGGAATACCAAGACAGAGTATGTCTCATGCCCATCTTGTGGCAGAACT
TTGTTCGACCTTCAAGAAATAAGTGCACAAATACGAGAAAAGACATCACA
CTTGCCTGGTGTTTCGATTGCAATCATGGGTTGCATCGTCAATGGTCCTG
GGGAAATGGCTGATGCAGATTTCGGATACGTAGGTGGTGCTCCTGGAAAA
ATTGACCTCTATGTTGGCAAGACTGTTGTGCAGCGTGGAATTGCAATGGA
GCATGCAACCGATGCTCTGATCCAATTAATAAAAGATCATGGCCGCTGGG
TAGACCCTCCTGCCGAAGAATAA
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protein sequence of Tc09v2_p028620.1

>Tc09v2_p028620.1 ID=Tc09v2_p028620.1|Name=Tc09v2_p028620.1|organism=Theobroma cacao|type=polypeptide|length=741bp
MATGAVPASFSGLKDRDSSLGFAKSMDFVRVCDLKRIKSGRTRISVIRNQ
NPGPDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSE
HPIRIQTMTTTDTKDVAGTVEQVMRIADKGADIVRITVQGKREADACFEI
KNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFET
IEYTDEEYQKELEHIEKVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY
GDSPRGMVESAFEFAKICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMY
VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE
EEIDPCRRMANLGMRAAQLQKGVAPFEEKHRHYFDFQRRSGQLPTQKEGE
EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLALKLVVGMPFKDLATVD
SIILRELPPVDDIDARLALKRLIDISMGVITPLSEQLTKPLPNAMALVNL
KELSTGAYKLLPEGTRLVVSVRGDEPYEELEILKGIDATMLLHDIPYNED
KIGRVHAARRLFEYLSENALDFPVIHHIQFPNGIHRDDLVINAGTNAGAL
LVDGLGDGVLLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRT
LFDLQEISAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGK
IDLYVGKTVVQRGIAMEHATDALIQLIKDHGRWVDPPAEE*
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