Tc09v2_t025740.4

Overview
NameTc09v2_t025740.4
Unique NameTc09v2_t025740.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length4026
Properties
Property NameValue
NoteDExH-box ATP-dependent RNA helicase DExH11
Model evidenceSupporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH11, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590552
GenbankXM_018127718.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g025740Tc09v2_g025740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p025740.4Tc09v2_p025740.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto475223auto475223Theobroma cacaoexon
exon-auto475224auto475224Theobroma cacaoexon
exon-auto475225auto475225Theobroma cacaoexon
exon-auto475226auto475226Theobroma cacaoexon
exon-auto475227auto475227Theobroma cacaoexon
exon-auto475228auto475228Theobroma cacaoexon
exon-auto475229auto475229Theobroma cacaoexon
exon-auto475230auto475230Theobroma cacaoexon
exon-auto475231auto475231Theobroma cacaoexon
exon-auto475232auto475232Theobroma cacaoexon
exon-auto475233auto475233Theobroma cacaoexon
exon-auto475234auto475234Theobroma cacaoexon
exon-auto475235auto475235Theobroma cacaoexon
exon-auto475236auto475236Theobroma cacaoexon
exon-auto475237auto475237Theobroma cacaoexon
exon-auto475238auto475238Theobroma cacaoexon
exon-auto475239auto475239Theobroma cacaoexon
exon-auto475240auto475240Theobroma cacaoexon
exon-auto475241auto475241Theobroma cacaoexon
exon-auto475242auto475242Theobroma cacaoexon
exon-auto475243auto475243Theobroma cacaoexon
exon-auto475244auto475244Theobroma cacaoexon
exon-auto475245auto475245Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto475246auto475246Theobroma cacaoCDS
CDS-auto475247auto475247Theobroma cacaoCDS
CDS-auto475248auto475248Theobroma cacaoCDS
CDS-auto475249auto475249Theobroma cacaoCDS
CDS-auto475250auto475250Theobroma cacaoCDS
CDS-auto475251auto475251Theobroma cacaoCDS
CDS-auto475252auto475252Theobroma cacaoCDS
CDS-auto475253auto475253Theobroma cacaoCDS
CDS-auto475254auto475254Theobroma cacaoCDS
CDS-auto475255auto475255Theobroma cacaoCDS
CDS-auto475256auto475256Theobroma cacaoCDS
CDS-auto475257auto475257Theobroma cacaoCDS
CDS-auto475258auto475258Theobroma cacaoCDS
CDS-auto475259auto475259Theobroma cacaoCDS
CDS-auto475260auto475260Theobroma cacaoCDS
CDS-auto475261auto475261Theobroma cacaoCDS
CDS-auto475262auto475262Theobroma cacaoCDS
CDS-auto475263auto475263Theobroma cacaoCDS
CDS-auto475264auto475264Theobroma cacaoCDS
CDS-auto475265auto475265Theobroma cacaoCDS
CDS-auto475266auto475266Theobroma cacaoCDS
CDS-auto475267auto475267Theobroma cacaoCDS
CDS-auto475268auto475268Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t025740.4 ID=Tc09v2_t025740.4|Name=Tc09v2_t025740.4|organism=Theobroma cacao|type=mRNA|length=4026bp
ATGAAACCGATCCAAGCAGCAAACGGATTCAGTTTCCGAGTCGGATTCTC
CGGCCACAGCGGCCACCTCAGAGTCGAGCCTCTCTACACCGAGGAGCGCG
ATAACCCTATTAAAACTCTCCCCGACTTTGTTCTCCCACCTGCATTTCCC
AGGGAAACACCGGAATCGATTAAGGAACATATAAAGGAGAAATATCTTTT
GCCAAGATTGGACGATGAAGCTTTTTCTCCAGAAAAAGCTGGAAGGCAAT
GGGATTTTGACTGGTTTGAAAGGGTAAAAATACCATTGGAGCCATCATTG
CCAAGAACTGTTATGGTTCCAGTCTGGGAGTTACCCTTCAGACGGTGCAA
AGGGGGATCAGTTGAAGGAAAGTGGGAACCTAATTCATTGCAGGTGGATG
TATCAGAACTAATAGTTGGGGGTCAAGCTTCTGGTTCTTTTCCACACACG
GTTGGTGGTGCTGCCAAGGATTTTGTAAGAGGAAGCATTAATAACCGACC
TTTTCGTCCAGGAGGCTTGGAGGATCAATCTGTAGAGAGGATTCTTCCGG
ATGGTGCATGTAATGGTGAGTGGGTTAGTGAGGTGCTAAATGGTGGTCCT
GTTCAAACAATTCCTCCAGGCTTTAAGCAAGGGTTAAACCTTGGTGATCT
TACGGCACATCCTTGCTTATGGAATGTTTACAAGGACCGAATTTCACTCA
ATAACACATCAGTTGAAAAGGTGAGTGAGTTGTCTGTACAATTTGACGAC
TTGTTCAAGAAAGCTTGGGAAGAGGATGTTACAGAATTTGAGAAAGATGA
ATCAGATTCTGTTAAGTCAGAAGCTGAGGCGAACCAGGCTGATGTTCTCA
ACAGTCTTGATACTGGATCATCTGCTTTGGATGAAATTTTATCAGTTGAA
GCAGAAAGATTAGATGAGAAAAGTGATGGGGGTGGTCAGCAACAAAAGGA
GGCTTGGGCTGTTAGTGGAGGTAGTGAAGGGATTGCTGATCACTTTTACG
AACTAGTTCCTGACATGGCAATTGAATATCCTTTTGAATTGGATACATTC
CAGAAGGAGGCTATTTATTATTTGGAAAAGGGGGAGTCTGTTTTTGTGGC
GGCTCATACATCTGCTGGAAAAACAGTTGTTGCAGAATATGCATTTGCTT
TGGCGTCAAAACATTGCACTAGAGCTGTGTATACAGCTCCAATTAAAACA
ATCAGCAATCAGAAGTATAGAGATTTCTGTGGGAAATTTGATGTTGGTCT
TCTTACTGGTGATGTTAGTTTGAGACCTGAGGCTTCTTGTCTCATCATGA
CGACTGAAATATTAAGGTCAATGCTTTATCGGGGTGCGGATATTATTCGC
GATATTGAATGGGTTATATTTGATGAGGTGCACTACGTGAATGATGTTGA
AAGAGGCGTGGTTTGGGAAGAGGTCATAATCATGCTTCCAAAACATATTA
ACATCATCCTCCTTTCAGCCACGGTGCCGAATACAATTGAATTTGCTGAT
TGGATTGGTCGGACGAAGCAAAAAAAAATTCGTGTCACTGGGACAACAAA
AAGACCAGTCCCACTGGAGCATTGCCTGTTTTATTCTGGAGAACTTTACA
AAATATGTGAAAGTGAAACTTTTATATCATTGGGACTAAAGGCTGCCAAA
GATGCATACAAGAAAAAGAATTCCAATGCAATTAGTGGTGGTACTGCTTC
GTATACTGGTTCTTCTGCAGTTCATGATGGGGCTCGAGGTCAGAAACGTG
AAATTTCTAACCGAGGGAAACAAAATAAGCATTCTGGTCCACAAAATTTG
GGGCACTATTCTGGGACAGGTTGGGGGAATCAAGGCAGTGGAGGTGGCCA
GAATAGTTGGGGATCTAGGAGATCAGCATGGTTGATGCTTATTGACAAGC
TTTCAAAGCAGTCACTATTACCTGTGGTTATATTTGGTTTCTCAAAGAAC
CAATGTGATAAATCAGCTGACAGCATCTCTGGGACTGACCTCACTAGTAG
TTCTGAGAAAAGTGAGATCCGTGTTTTTTGTGATAAAGCTTTTTCACGGC
TTAAGGGATCTGATCGCAATTTACCTCAGGTTGTCAGAGTTCAGAACCTT
CTTTGCAGAGGAATTGGTGTGCATCATGCAGGTTTGCTTCCAATTGTCAA
GGAAGTTGTTGAAATGCTCTTCTGTCGAGGTGTGATTAAGGTTTTGTTTT
CAACAGAGACATTTGCCATGGGTGTTAATGCTCCAGCCAGAACGGTTGTC
TTTGATACATTAAGGAAGTTTGATGGCAAGGAATTTAGACAGTTACTCCC
TGGGGAATACACTCAAATGGCAGGTCGTGCTGGCAGAAGAGGACTTGATA
AAACTGGTACAGTTATTGTGATGTGCCGTGATGAAATCCCAGAAGAGAGG
GATTTGAAACATGTTATAACTGGAACTCCAACTAATCTCGAATCTCAGTT
CCGATTGACATACATTATGATCCTACATCTTCTTCGTGTGGAAGAACTGA
AGGTGGAGGACATGTTGAAACGGAGTTTTTCTGAATTTCATGCTCAGAAG
AAACTTCCAGAGCAGCAACAACGTCTATTGCGAAAGCTTGCACAGCCAAA
GAAAACTATAGAATGTATTAAAGGTGAACCTGCAATTGAAGAGTACTATG
AGATGCATGCAGAAGCCGAGGAACACTACCGACAGATATCAAATGCTGTC
ATGCAGTCTCCTGTTGCCCAACAATTTCTTACTGTTGGGAGAGTGGTTGT
GGTGAAATCTCAGTCAGCCCACGACCATTTACTTGGAGTTGTCGTAAAAT
CACCTTCTGCCAATAACAAACAATATATTGTGCAAGTTCTTAAACCTGAT
GTGCCATTAATGACTCAAACTCCCTCAAGCAGCAGTAACTTGCAAGATAA
GAGAAGTGCTGACTTCCAACAAGGTTATGTGCTGCTACCAAAAGCTAAAC
GTGGTCTCGAAGAAGACTACCGCTTATCTACTGGTCCACGCAAAGGATCA
GGTATCATCAACATAAAACTGCCTCACCATGGTGCTGCTGCAGGAGTGAG
TTTTGAGGTCAGAGAAACTGATAATACAGAATTCTTATGCATATGCAATA
GCAAGATAAAAGTCGAGCAAGTTGGGATTCTTGAATATGGTAGCGATACT
GCTTTCTCTAACGCAGTTCAGCAGCTGTTGAAATTGAAATCTAATGGAAA
CAAATATCCTCCAGCCTTAGATCCAATTAAAGATCTCAAATTGAAAGACA
TGGATCTTGTTCAAAAATACTACAAGTGGACCCACCTACTGCAAAAAATG
TCAGAGAACAAATGCCACGAATGTATTAAGTTGGAGGAGCACATTAAGCT
AGCTAGAGAGATTAAGAAGCATAAAGATGAAGTTAATGCTCTTGAATTTC
AATTGTCTAATGAAGCGCTCCAACAGATGCCAGAATTTCAGGGCCGGATT
GATGTTCTGAAGGAAATTGGTTGTATAGATGAAGACCATGTGGTTCAATT
AAAAGGTCGTGTTGCCTGTGAGATGAATTCAGGGGAGGAATTGATATGCA
CAGAATGTTTATTTGAGAATCAACTAGATGACCTGGAACCTGAAGAAGCG
GTGGCTTTAATGTCGGCCTTCGTCTTTCAGCAGAAGAACACTTCTGAACC
TTCTCTTACATCAAAACTCTCTCAGGCCAAAAAAAGATTGTATGACACAG
CTATAAAACTTGGTAATCTTCAAGCAGGGTTCAAATTACAAATAACACCT
GAGGAGTATGCGAAAGAAAATCTCAAGTTTGGTCTTGTTGAAGTGGTGTA
CGAATGGGCAAAGGGAACTCCATTTGCAGAAATTTGTGAGCTCACGGATG
TTCCTGAAGGCCTTATAGTGCGGACAATTGTCAGGCTGGACGAGACTTGT
CGTGAATTTAAAAGTGCTGCAGCTATAATGGGTAATTCATCACTTTATAA
GAAAATGGAATCTGCTTCCAATGCCATAAAGCGTGATATCGTCTTTGCTG
CTAGTTTGTACATTACAGGAGTGTGA
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protein sequence of Tc09v2_p025740.4

>Tc09v2_p025740.4 ID=Tc09v2_p025740.4|Name=Tc09v2_p025740.4|organism=Theobroma cacao|type=polypeptide|length=1342bp
MKPIQAANGFSFRVGFSGHSGHLRVEPLYTEERDNPIKTLPDFVLPPAFP
RETPESIKEHIKEKYLLPRLDDEAFSPEKAGRQWDFDWFERVKIPLEPSL
PRTVMVPVWELPFRRCKGGSVEGKWEPNSLQVDVSELIVGGQASGSFPHT
VGGAAKDFVRGSINNRPFRPGGLEDQSVERILPDGACNGEWVSEVLNGGP
VQTIPPGFKQGLNLGDLTAHPCLWNVYKDRISLNNTSVEKVSELSVQFDD
LFKKAWEEDVTEFEKDESDSVKSEAEANQADVLNSLDTGSSALDEILSVE
AERLDEKSDGGGQQQKEAWAVSGGSEGIADHFYELVPDMAIEYPFELDTF
QKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKT
ISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIR
DIEWVIFDEVHYVNDVERGVVWEEVIIMLPKHINIILLSATVPNTIEFAD
WIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKICESETFISLGLKAAK
DAYKKKNSNAISGGTASYTGSSAVHDGARGQKREISNRGKQNKHSGPQNL
GHYSGTGWGNQGSGGGQNSWGSRRSAWLMLIDKLSKQSLLPVVIFGFSKN
QCDKSADSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNL
LCRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV
FDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVIVMCRDEIPEER
DLKHVITGTPTNLESQFRLTYIMILHLLRVEELKVEDMLKRSFSEFHAQK
KLPEQQQRLLRKLAQPKKTIECIKGEPAIEEYYEMHAEAEEHYRQISNAV
MQSPVAQQFLTVGRVVVVKSQSAHDHLLGVVVKSPSANNKQYIVQVLKPD
VPLMTQTPSSSSNLQDKRSADFQQGYVLLPKAKRGLEEDYRLSTGPRKGS
GIINIKLPHHGAAAGVSFEVRETDNTEFLCICNSKIKVEQVGILEYGSDT
AFSNAVQQLLKLKSNGNKYPPALDPIKDLKLKDMDLVQKYYKWTHLLQKM
SENKCHECIKLEEHIKLAREIKKHKDEVNALEFQLSNEALQQMPEFQGRI
DVLKEIGCIDEDHVVQLKGRVACEMNSGEELICTECLFENQLDDLEPEEA
VALMSAFVFQQKNTSEPSLTSKLSQAKKRLYDTAIKLGNLQAGFKLQITP
EEYAKENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETC
REFKSAAAIMGNSSLYKKMESASNAIKRDIVFAASLYITGV*
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