Tc09v2_t025740.1

Overview
NameTc09v2_t025740.1
Unique NameTc09v2_t025740.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3708
Properties
Property NameValue
NoteDExH-box ATP-dependent RNA helicase DExH11
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH11, transcript variant X5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590552
GenbankXM_018127720.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g025740Tc09v2_g025740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p025740.1Tc09v2_p025740.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto475081auto475081Theobroma cacaoexon
exon-auto475082auto475082Theobroma cacaoexon
exon-auto475083auto475083Theobroma cacaoexon
exon-auto475084auto475084Theobroma cacaoexon
exon-auto475085auto475085Theobroma cacaoexon
exon-auto475086auto475086Theobroma cacaoexon
exon-auto475087auto475087Theobroma cacaoexon
exon-auto475088auto475088Theobroma cacaoexon
exon-auto475089auto475089Theobroma cacaoexon
exon-auto475090auto475090Theobroma cacaoexon
exon-auto475091auto475091Theobroma cacaoexon
exon-auto475092auto475092Theobroma cacaoexon
exon-auto475093auto475093Theobroma cacaoexon
exon-auto475094auto475094Theobroma cacaoexon
exon-auto475095auto475095Theobroma cacaoexon
exon-auto475096auto475096Theobroma cacaoexon
exon-auto475097auto475097Theobroma cacaoexon
exon-auto475098auto475098Theobroma cacaoexon
exon-auto475099auto475099Theobroma cacaoexon
exon-auto475100auto475100Theobroma cacaoexon
exon-auto475101auto475101Theobroma cacaoexon
exon-auto475102auto475102Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto475103auto475103Theobroma cacaoCDS
CDS-auto475104auto475104Theobroma cacaoCDS
CDS-auto475105auto475105Theobroma cacaoCDS
CDS-auto475106auto475106Theobroma cacaoCDS
CDS-auto475107auto475107Theobroma cacaoCDS
CDS-auto475108auto475108Theobroma cacaoCDS
CDS-auto475109auto475109Theobroma cacaoCDS
CDS-auto475110auto475110Theobroma cacaoCDS
CDS-auto475111auto475111Theobroma cacaoCDS
CDS-auto475112auto475112Theobroma cacaoCDS
CDS-auto475113auto475113Theobroma cacaoCDS
CDS-auto475114auto475114Theobroma cacaoCDS
CDS-auto475115auto475115Theobroma cacaoCDS
CDS-auto475116auto475116Theobroma cacaoCDS
CDS-auto475117auto475117Theobroma cacaoCDS
CDS-auto475118auto475118Theobroma cacaoCDS
CDS-auto475119auto475119Theobroma cacaoCDS
CDS-auto475120auto475120Theobroma cacaoCDS
CDS-auto475121auto475121Theobroma cacaoCDS
CDS-auto475122auto475122Theobroma cacaoCDS
CDS-auto475123auto475123Theobroma cacaoCDS
CDS-auto475124auto475124Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t025740.1 ID=Tc09v2_t025740.1|Name=Tc09v2_t025740.1|organism=Theobroma cacao|type=mRNA|length=3708bp
ATGAAACCGATCCAAGCAGCAAACGGATTCAGTTTCCGAGTCGGATTCTC
CGGCCACAGCGGCCACCTCAGAGTCGAGCCTCTCTACACCGAGGAGCGCG
ATAACCCTATTAAAACTCTCCCCGACTTTGTTCTCCCACCTGCATTTCCC
AGGGAAACACCGGAATCGATTAAGGAACATATAAAGGAGAAATATCTTTT
GCCAAGATTGGACGATGAAGCTTTTTCTCCAGAAAAAGCTGGAAGGCAAT
GGGATTTTGACTGGTTTGAAAGGGTAAAAATACCATTGGAGCCATCATTG
CCAAGAACTGTTATGGTTCCAGTCTGGGAGTTACCCTTCAGACGGTGCAA
AGGGGGATCAGTTGAAGGAAAGTGGGAACCTAATTCATTGCAGGTGGATG
TATCAGAACTAATAGTTGGGGGTCAAGCTTCTGGTTCTTTTCCACACACG
GTTGGTGGTGCTGCCAAGGATTTTGTAAGAGGAAGCATTAATAACCGACC
TTTTCGTCCAGGAGGCTTGGAGGATCAATCTGTAGAGAGGATTCTTCCGG
ATGGTGCATGTAATGGTGAGTGGGTTAGTGAGGTGCTAAATGGTGGTCCT
GTTCAAACAATTCCTCCAGGCTTTAAGCAAGGGTTAAACCTTGGTGATCT
TACGGCACATCCTTGCTTATGGAATGTTTACAAGGACCGAATTTCACTCA
ATAACACATCAGTTGAAAAGGTGAGTGAGTTGTCTGTACAATTTGACGAC
TTGTTCAAGAAAGCTTGGGAAGAGGATGTTACAGAATTTGAGAAAGATGG
GCATTCAACAGAATCAGATTCTGTTAAGTCAGAAGCTGAGGCGAACCAGG
CTGATGTTCTCAACAGTCTTGATACTGGATCATCTGCTTTGGATGAAATT
TTATCAGTTGAAGCAGAAAGATTAGATGAGAAAAGTGATGGGGGTGGTCA
GCAACAAAAGGAGGCTTGGGCTGTTAGTGGAGGTAGTGAAGGGATTGCTG
ATCACTTTTACGAACTAGTTCCTGACATGGCAATTGAATATCCTTTTGAA
TTGGATACATTCCAGAAGGAGGCTATTTATTATTTGGAAAAGGGGGAGTC
TGTTTTTGTGGCGGCTCATACATCTGCTGGAAAAACAGTTGTTGCAGAAT
ATGCATTTGCTTTGGCGTCAAAACATTGCACTAGAGCTGTGTATACAGCT
CCAATTAAAACAATCAGCAATCAGAAGTATAGAGATTTCTGTGGGAAATT
TGATGTTGGTCTTCTTACTGGTGATGTTAGTTTGAGACCTGAGGCTTCTT
GTCTCATCATGACGACTGAAATATTAAGGTCAATGCTTTATCGGGGTGCG
GATATTATTCGCGATATTGAATGGGTTATATTTGATGAGGTGCACTACGT
GAATGATGTTGAAAGAGGCGTGGTTTGGGAAGAGGTCATAATCATGCTTC
CAAAACATATTAACATCATCCTCCTTTCAGCCACGGTGCCGAATACAATT
GAATTTGCTGATTGGATTGGTCGGACGAAGCAAAAAAAAATTCGTGTCAC
TGGGACAACAAAAAGACCAGTCCCACTGGAGCATTGCCTGTTTTATTCTG
GAGAACTTTACAAAATATGTGAAAGTGAAACTTTTATATCATTGGGACTA
AAGGCTGCCAAAGATGCATACAAGAAAAAGAATTCCAATGCAATTAGTGG
TGGTACTGCTTCGTATACTGGTTCTTCTGCAGTTCATGATGGGGCTCGAG
GTCAGAAACGTGAAATTTCTAACCGAGGGAAACAAAATAAGCATTCTGGT
CCACAAAATTTGGGGCACTATTCTGGGACAGGTTGGGGGAATCAAGGCAG
TGGAGGTGGCCAGAATAGTTGGGGATCTAGGAGATCAGCATGGTTGATGC
TTATTGACAAGCTTTCAAAGCAGTCACTATTACCTGTGGTTATATTTGGT
TTCTCAAAGAACCAATGTGATAAATCAGCTGACAGCATCTCTGGGACTGA
CCTCACTAGTAGTTCTGAGAAAAGTGAGATCCGTGTTTTTTGTGATAAAG
CTTTTTCACGGCTTAAGGGATCTGATCGCAATTTACCTCAGGTTGTCAGA
GTTCAGAACCTTCTTTGCAGAGGAATTGGTGTGCATCATGCAGGTTTGCT
TCCAATTGTCAAGGAAGTTGTTGAAATGCTCTTCTGTCGAGGTGTGATTA
AGGTTTTGTTTTCAACAGAGACATTTGCCATGGGTGTTAATGCTCCAGCC
AGAACGGTTGTCTTTGATACATTAAGGAAGTTTGATGGCAAGGAATTTAG
ACAGTTACTCCCTGGGGAATACACTCAAATGGCAGGTCGTGCTGGCAGAA
GAGGACTTGATAAAACTGGTACAGTTATTGTGATGTGCCGTGATGAAATC
CCAGAAGAGAGGGATTTGAAACATGTTATAACTGGAACTCCAACTAATCT
CGAATCTCAGTTCCGATTGACATACATTATGATCCTACATCTTCTTCGTG
TGGAAGAACTGAAGGTGGAGGACATGTTGAAACGGAGTTTTTCTGAATTT
CATGCTCAGAAGAAACTTCCAGAGCAGCAACAACGTCTATTGCGAAAGCT
TGCACAGCCAAAGAAAACTATAGAATGTATTAAAGGTGAACCTGCAATTG
AAGAGTACTATGAGATGCATGCAGAAGCCGAGGAACACTACCGACAGATA
TCAAATGCTGTCATGCAGTCTCCTGTTGCCCAACAATTTCTTACTGTTGG
GAGAGTGGTTGTGGTGAAATCTCAGTCAGCCCACGACCATTTACTTGGAG
TTGTCGTAAAATCACCTTCTGCCAATAACAAACAATATATTGTGCAAGTT
CTTAAACCTGATGTGCCATTAATGACTCAAACTCCCTCAAGCAGCAGTAA
CTTGCAAGATAAGAGAAGTGCTGACTTCCAACAAGGTTATGTGCTGCTAC
CAAAAGCTAAACGTGGTCTCGAAGAAGACTACCGCTTATCTACTGGTCCA
CGCAAAGGATCAGGTATCATCAACATAAAACTGCCTCACCATGGTGCTGC
TGCAGGAGTGAGTTTTGAGGTCAGAGAAACTGATAATACAGAATTCTTAT
GCATATGCAATAGCAAGATAAAAGTCGAGCAAGTTGGGATTCTTGAATAT
GGTAGCGATACTGCTTTCTCTAACGCAGTTCAGCAGCTGTTGAAATTGAA
ATCTAATGGAAACAAATATCCTCCAGCCTTAGATCCAATTAAAGATCTCA
AATTGAAAGACATGGATCTTGTTCAAAAATACTACAAGTGGACCCACCTA
CTGCAAAAAATGTCAGAGAACAAATGCCACGAATGTATTAAGTTGGAGGA
GCACATTAAGCTAGCTAGAGAGATTAAGAAGCATAAAGATGAAGTTAATG
CTCTTGAATTTCAATTGTCTAATGAAGCGCTCCAACAGATGCCAGAATTT
CAGGGCCGGATTGATGTTCTGAAGGAAATTGGTTGTATAGATGAAGACCA
TGTGGTTCAATTAAAAGGTCGTGTTGCCTGTGAGATGAATTCAGGGGAGG
AATTGATATGCACAGAATGTTTATTTGAGAATCAACTAGATGACCTGGAA
CCTGAAGAAGCGGTGGCTTTAATGTCGGCCTTCGTCTTTCAGCAGAAGAA
CACTTCTGAACCTTCTCTTACATCAAAACTCTCTCAGGCCAAAAAAAAGA
TTGTATGA
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protein sequence of Tc09v2_p025740.1

>Tc09v2_p025740.1 ID=Tc09v2_p025740.1|Name=Tc09v2_p025740.1|organism=Theobroma cacao|type=polypeptide|length=1236bp
MKPIQAANGFSFRVGFSGHSGHLRVEPLYTEERDNPIKTLPDFVLPPAFP
RETPESIKEHIKEKYLLPRLDDEAFSPEKAGRQWDFDWFERVKIPLEPSL
PRTVMVPVWELPFRRCKGGSVEGKWEPNSLQVDVSELIVGGQASGSFPHT
VGGAAKDFVRGSINNRPFRPGGLEDQSVERILPDGACNGEWVSEVLNGGP
VQTIPPGFKQGLNLGDLTAHPCLWNVYKDRISLNNTSVEKVSELSVQFDD
LFKKAWEEDVTEFEKDGHSTESDSVKSEAEANQADVLNSLDTGSSALDEI
LSVEAERLDEKSDGGGQQQKEAWAVSGGSEGIADHFYELVPDMAIEYPFE
LDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTA
PIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGA
DIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPKHINIILLSATVPNTI
EFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKICESETFISLGL
KAAKDAYKKKNSNAISGGTASYTGSSAVHDGARGQKREISNRGKQNKHSG
PQNLGHYSGTGWGNQGSGGGQNSWGSRRSAWLMLIDKLSKQSLLPVVIFG
FSKNQCDKSADSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVR
VQNLLCRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPA
RTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVIVMCRDEI
PEERDLKHVITGTPTNLESQFRLTYIMILHLLRVEELKVEDMLKRSFSEF
HAQKKLPEQQQRLLRKLAQPKKTIECIKGEPAIEEYYEMHAEAEEHYRQI
SNAVMQSPVAQQFLTVGRVVVVKSQSAHDHLLGVVVKSPSANNKQYIVQV
LKPDVPLMTQTPSSSSNLQDKRSADFQQGYVLLPKAKRGLEEDYRLSTGP
RKGSGIINIKLPHHGAAAGVSFEVRETDNTEFLCICNSKIKVEQVGILEY
GSDTAFSNAVQQLLKLKSNGNKYPPALDPIKDLKLKDMDLVQKYYKWTHL
LQKMSENKCHECIKLEEHIKLAREIKKHKDEVNALEFQLSNEALQQMPEF
QGRIDVLKEIGCIDEDHVVQLKGRVACEMNSGEELICTECLFENQLDDLE
PEEAVALMSAFVFQQKNTSEPSLTSKLSQAKKKIV*
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