Tc09v2_t024720.4

Overview
NameTc09v2_t024720.4
Unique NameTc09v2_t024720.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length966
Properties
Property NameValue
NoteSolanesyl-diphosphate synthase 1, mitochondrial
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productsolanesyl-diphosphate synthase 1, mitochondrial, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590442
GenbankXM_018128242.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g024720Tc09v2_g024720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p024720.4Tc09v2_p024720.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto473183auto473183Theobroma cacaoexon
exon-auto473184auto473184Theobroma cacaoexon
exon-auto473185auto473185Theobroma cacaoexon
exon-auto473186auto473186Theobroma cacaoexon
exon-auto473187auto473187Theobroma cacaoexon
exon-auto473188auto473188Theobroma cacaoexon
exon-auto473189auto473189Theobroma cacaoexon
exon-auto473190auto473190Theobroma cacaoexon
exon-auto473191auto473191Theobroma cacaoexon
exon-auto473192auto473192Theobroma cacaoexon
exon-auto473193auto473193Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto473194auto473194Theobroma cacaoCDS
CDS-auto473195auto473195Theobroma cacaoCDS
CDS-auto473196auto473196Theobroma cacaoCDS
CDS-auto473197auto473197Theobroma cacaoCDS
CDS-auto473198auto473198Theobroma cacaoCDS
CDS-auto473199auto473199Theobroma cacaoCDS
CDS-auto473200auto473200Theobroma cacaoCDS
CDS-auto473201auto473201Theobroma cacaoCDS
CDS-auto473202auto473202Theobroma cacaoCDS
CDS-auto473203auto473203Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t024720.4 ID=Tc09v2_t024720.4|Name=Tc09v2_t024720.4|organism=Theobroma cacao|type=mRNA|length=966bp
ATGGTAGTTGCTGAAGTTCCTAATCTTGCTTCAGCTGCTGAGTACTTCTT
CAAAATTGGCGCAGAAGGAAAGAGGTTTCGTCCCACGGTTTTACTTTTGA
TGGCGACAGCTTTGAGTGTGCGTATACCTGAACTACCTCCTGCTGGAGTT
GGAGATACCTTGCCAACTGACTTACGTACAAGTCAGCAGCGTATAGCTGA
GATCACGGAGATGATCCATGTGGCAAGCCTCCTTCATGATGATGTCTTGG
ATGATGCAGATAAAAGACGGGGTATTTGTTCGTTAAATGCTGTAATGGGC
AATAAGCTGGCTGTATTAGCAGGAGATTTCCTGCTTTCTCGAGCTTGTGT
GTCCCTAGCCTCGTTAAAAAATACAGAGGTTGTCACCTTAATAGCAACAG
TGGTAGAGAATCTTGTTACAGGTGAAACCATGCAACTTACAACTGCTTCT
AAACAACGTTTTAGTATGGATTATTACATGCAGAAGACATACAATAAGAC
TGCATCCTTAATATCAAACAGCTGCAAGTCAATTGCCATTCTTGCTGGCC
ATACAGCAGAAGTTGCGATGTTGGCCTTTGAGTACGGCAAAAATCTGGGA
TTAGCATTTCAATTGATAGATGATGTTCTTGATTTCACAGGCACTTCAGC
ATCCCTTGGAAAGGGTTCTTTATCTGATATCCGACATGGAATCATAACAG
CTCCAATCTTGTTTGCCATGGAAGAATTTCCTGAATTGCATGCAGTCGTT
GACCAGGGATTCAAAAACCCTGCAAATGTTGACATAGCCCTTGGATTCCT
TGGGAAGAGTAGTGGAATACAAAGGACCAAGGAACTAGCTATGAAGCATG
CTAACCTCGCTGCACAAGTGATTGAATCTCTACCAGAAAGTGATGATGCA
AATGTAATAAGGTCACGGCAGGCACTCATAGATCTCACTCAAAGAGTACT
TACCAGAAATAAGTGA
back to top

protein sequence of Tc09v2_p024720.4

>Tc09v2_p024720.4 ID=Tc09v2_p024720.4|Name=Tc09v2_p024720.4|organism=Theobroma cacao|type=polypeptide|length=322bp
MVVAEVPNLASAAEYFFKIGAEGKRFRPTVLLLMATALSVRIPELPPAGV
GDTLPTDLRTSQQRIAEITEMIHVASLLHDDVLDDADKRRGICSLNAVMG
NKLAVLAGDFLLSRACVSLASLKNTEVVTLIATVVENLVTGETMQLTTAS
KQRFSMDYYMQKTYNKTASLISNSCKSIAILAGHTAEVAMLAFEYGKNLG
LAFQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPELHAVV
DQGFKNPANVDIALGFLGKSSGIQRTKELAMKHANLAAQVIESLPESDDA
NVIRSRQALIDLTQRVLTRNK*
back to top