Tc09v2_t024720.2

Overview
NameTc09v2_t024720.2
Unique NameTc09v2_t024720.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1035
Properties
Property NameValue
NoteSolanesyl-diphosphate synthase 1, mitochondrial
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productsolanesyl-diphosphate synthase 1, mitochondrial, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590442
GenbankXM_018128241.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g024720Tc09v2_g024720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p024720.2Tc09v2_p024720.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto473134auto473134Theobroma cacaoexon
exon-auto473135auto473135Theobroma cacaoexon
exon-auto473136auto473136Theobroma cacaoexon
exon-auto473137auto473137Theobroma cacaoexon
exon-auto473138auto473138Theobroma cacaoexon
exon-auto473139auto473139Theobroma cacaoexon
exon-auto473140auto473140Theobroma cacaoexon
exon-auto473141auto473141Theobroma cacaoexon
exon-auto473142auto473142Theobroma cacaoexon
exon-auto473143auto473143Theobroma cacaoexon
exon-auto473144auto473144Theobroma cacaoexon
exon-auto473145auto473145Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto473146auto473146Theobroma cacaoCDS
CDS-auto473147auto473147Theobroma cacaoCDS
CDS-auto473148auto473148Theobroma cacaoCDS
CDS-auto473149auto473149Theobroma cacaoCDS
CDS-auto473150auto473150Theobroma cacaoCDS
CDS-auto473151auto473151Theobroma cacaoCDS
CDS-auto473152auto473152Theobroma cacaoCDS
CDS-auto473153auto473153Theobroma cacaoCDS
CDS-auto473154auto473154Theobroma cacaoCDS
CDS-auto473155auto473155Theobroma cacaoCDS
CDS-auto473156auto473156Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t024720.2 ID=Tc09v2_t024720.2|Name=Tc09v2_t024720.2|organism=Theobroma cacao|type=mRNA|length=1035bp
ATGGAACGACTAGACCCATTTTCACTTGTTGCTGATGAACTATCACTTAT
TGCTAACAGGCTTCGGTCAATGGTAGTTGCTGAAGTTCCTAATCTTGCTT
CAGCTGCTGAGTACTTCTTCAAAATTGGCGCAGAAGGAAAGAGGTTTCGT
CCCACGGTTTTACTTTTGATGGCGACAGCTTTGAGTGTGCGTATACCTGA
ACTACCTCCTGCTGGAGTTGGAGATACCTTGCCAACTGACTTACGTACAA
GTCAGCAGCGTATAGCTGAGATCACGGAGATGATCCATGTGGCAAGCCTC
CTTCATGATGATGTCTTGGATGATGCAGATAAAAGACGGGGTATTTGTTC
GTTAAATGCTGTAATGGGCAATAAGCTGGCTGTATTAGCAGGAGATTTCC
TGCTTTCTCGAGCTTGTGTGTCCCTAGCCTCGTTAAAAAATACAGAGGTT
GTCACCTTAATAGCAACAGTGGTAGAGAATCTTGTTACAGGTGAAACCAT
GCAACTTACAACTGCTTCTAAACAACGTTTTAGTATGGATTATTACATGC
AGAAGACATACAATAAGACTGCATCCTTAATATCAAACAGCTGCAAGTCA
ATTGCCATTCTTGCTGGCCATACAGCAGAAGTTGCGATGTTGGCCTTTGA
GTACGGCAAAAATCTGGGATTAGCATTTCAATTGATAGATGATGTTCTTG
ATTTCACAGGCACTTCAGCATCCCTTGGAAAGGGTTCTTTATCTGATATC
CGACATGGAATCATAACAGCTCCAATCTTGTTTGCCATGGAAGAATTTCC
TGAATTGCATGCAGTCGTTGACCAGGGATTCAAAAACCCTGCAAATGTTG
ACATAGCCCTTGGATTCCTTGGGAAGAGTAGTGGAATACAAAGGACCAAG
GAACTAGCTATGAAGCATGCTAACCTCGCTGCACAAGTGATTGAATCTCT
ACCAGAAAGTGATGATGCAAATGTAATAAGGTCACGGCAGGCACTCATAG
ATCTCACTCAAAGAGTACTTACCAGAAATAAGTGA
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protein sequence of Tc09v2_p024720.2

>Tc09v2_p024720.2 ID=Tc09v2_p024720.2|Name=Tc09v2_p024720.2|organism=Theobroma cacao|type=polypeptide|length=345bp
MERLDPFSLVADELSLIANRLRSMVVAEVPNLASAAEYFFKIGAEGKRFR
PTVLLLMATALSVRIPELPPAGVGDTLPTDLRTSQQRIAEITEMIHVASL
LHDDVLDDADKRRGICSLNAVMGNKLAVLAGDFLLSRACVSLASLKNTEV
VTLIATVVENLVTGETMQLTTASKQRFSMDYYMQKTYNKTASLISNSCKS
IAILAGHTAEVAMLAFEYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDI
RHGIITAPILFAMEEFPELHAVVDQGFKNPANVDIALGFLGKSSGIQRTK
ELAMKHANLAAQVIESLPESDDANVIRSRQALIDLTQRVLTRNK*
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