Tc09v2_t023970.6

Overview
NameTc09v2_t023970.6
Unique NameTc09v2_t023970.6
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length411
Properties
Property NameValue
NotePutative Histidine-containing phosphotransfer protein 2
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Producthistidine-containing phosphotransfer protein 2-like, transcript variant X6
Cross References
External references for this mRNA
DatabaseAccession
GeneID108663169
GenbankXM_018126555.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g023970Tc09v2_g023970Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p023970.6Tc09v2_p023970.6Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto471169auto471169Theobroma cacaoexon
exon-auto471170auto471170Theobroma cacaoexon
exon-auto471171auto471171Theobroma cacaoexon
exon-auto471172auto471172Theobroma cacaoexon
exon-auto471173auto471173Theobroma cacaoexon
exon-auto471174auto471174Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto471175auto471175Theobroma cacaoCDS
CDS-auto471176auto471176Theobroma cacaoCDS
CDS-auto471177auto471177Theobroma cacaoCDS
CDS-auto471178auto471178Theobroma cacaoCDS
CDS-auto471179auto471179Theobroma cacaoCDS
CDS-auto471180auto471180Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t023970.6 ID=Tc09v2_t023970.6|Name=Tc09v2_t023970.6|organism=Theobroma cacao|type=mRNA|length=411bp
ATGGCAGTGCCCATCCAGAAAGTTCTCCTTACTGGGTTCATTCACTCCAT
GCATTCTGAGGAAATCGTTGATGACCAATTCTATCAGCCGGAGGCCATCA
AGGACCCCGCCTGTTTATATTGTTGGAGAAGAGGCTGCATCATTAGTCTC
AGTGATCTCCCTAATGTTGATTTTTCTAACTTGGCTGCTCTGGCTACAGA
AATAGAGGAGAGAAGCTCCTGTATTGGTGCTGAGCATGTGAGACTCACAT
GCTTGGATCTTATGCGGGCTTGTGATCAGATGCAAAAGCAGAACTTCTGT
CAGGCCTTGAGTTGGACAAAGAATGAATTCGCTCATACCCGTAACAAGTT
GCAGGTCCTTGTCCAGATGGAGCGGAAGATTATGAGGCTCGAAGCAAAAC
AGCAAAAATAG
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protein sequence of Tc09v2_p023970.6

>Tc09v2_p023970.6 ID=Tc09v2_p023970.6|Name=Tc09v2_p023970.6|organism=Theobroma cacao|type=polypeptide|length=137bp
MAVPIQKVLLTGFIHSMHSEEIVDDQFYQPEAIKDPACLYCWRRGCIISL
SDLPNVDFSNLAALATEIEERSSCIGAEHVRLTCLDLMRACDQMQKQNFC
QALSWTKNEFAHTRNKLQVLVQMERKIMRLEAKQQK*
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