Tc09v2_t022180.3

Overview
NameTc09v2_t022180.3
Unique NameTc09v2_t022180.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length4104
Properties
Property NameValue
NoteIndole-3-acetaldehyde oxidase
Model evidenceSupporting evidence includes similarity to: 1 EST, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productindole-3-acetaldehyde oxidase, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18590149
GenbankXM_007015509.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g022180Tc09v2_g022180Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p022180.3Tc09v2_p022180.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto467877auto467877Theobroma cacaoexon
exon-auto467878auto467878Theobroma cacaoexon
exon-auto467879auto467879Theobroma cacaoexon
exon-auto467880auto467880Theobroma cacaoexon
exon-auto467881auto467881Theobroma cacaoexon
exon-auto467882auto467882Theobroma cacaoexon
exon-auto467883auto467883Theobroma cacaoexon
exon-auto467884auto467884Theobroma cacaoexon
exon-auto467885auto467885Theobroma cacaoexon
exon-auto467886auto467886Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto467887auto467887Theobroma cacaoCDS
CDS-auto467888auto467888Theobroma cacaoCDS
CDS-auto467889auto467889Theobroma cacaoCDS
CDS-auto467890auto467890Theobroma cacaoCDS
CDS-auto467891auto467891Theobroma cacaoCDS
CDS-auto467892auto467892Theobroma cacaoCDS
CDS-auto467893auto467893Theobroma cacaoCDS
CDS-auto467894auto467894Theobroma cacaoCDS
CDS-auto467895auto467895Theobroma cacaoCDS
CDS-auto467896auto467896Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t022180.3 ID=Tc09v2_t022180.3|Name=Tc09v2_t022180.3|organism=Theobroma cacao|type=mRNA|length=4104bp
ATGGGTGAGCACACAAACACTACCACAACAACAAAAACAGAACAAAGTCT
GGTTTTTGCAGTTAATGGACAGCGGTTTGAGCTCTCTGAAGTTGACCCTT
CTACTACTTTGCTTGAGTTCTTGCGTTCCCAGACTTCTTTCAAAAGTGTC
AAGCTTGGCTGTGGTGAAGGAGGATGTGGTGCCTGTGTTGTCCTACAGTC
CAAGTATGACCCTGTGCATGACAAGGTTGAGGATTTTACTGTTAGTTCAT
GCCTCACACTACTTTGTAGTGTAAATGGATGTTCAATCACAACAGCTGAG
GGGGTTGGAAATAGCAAGGATGGGTTCCACCCCATTCAAGAAAGATTCAG
TGGTTTCCATGCTTCTCAATGTGGTTATTGTACTCCCGGAATGTGTGTTT
CTCTTTATTCAGCACTTGTCAATGCTGATAAGACCAATAGGCCAGAACCA
CGTCCTGGATTCTCCAAGCTATCAGTTTCTGAAGCAGAAAAGTCTATTGC
AGGAAATCTTTGTCGCTGTACTGGTTACCGACCCATTGTTGATGCCTGTA
AAACTTTTGCTGCTGATGTTGATATGGAGGATTTGGGATTAAACTCCTTT
TGGAAAAAAGGAGAAAGTGATGAAGTAAAGCTTAGTAGATTACCTCCATA
CCATCATAATAATGGAACTTGTATGTTTCCTGAGTTTCTAAAGAAGGAAA
TTACGGCAGGTGTCAATCTGGCATCTGAAGGATATTATTGGTATAGTCCT
GTTTGTCTTGATCAGCTTCAAAGCTTATTGCAAATGGATGAGGAGAACGA
TGGAACCTCAACGAAAATTGTTGTTGGTAACACAGGAATGGGTTATTATA
AGGAAGTAGTACGTCATAACAAGTACATTGATTTGAGATATATTCCAGAG
CTATCAATCATCAGGAAAGACCTGGCAGGAATTGAAATTGGAGCATCTGT
GCCAATTTCTAAAGCCATTGAAGCTTTGAAGGAAGTAAATGAAGGTGAAC
TTAACCAAGAAGGTAACCTAGTGTTCAAAAAACTTGCTGACCATATGGAA
AGGATTGCTTCAGGGTTTATAAGGAATTCAGCTAGTATAGGAGGAAACCT
GATAATGGCTCAGAGGAAACATTTTCCATCAGATATTGCTACAATACTAC
TTTCTGTGGATACAATGGTTGATATATTGACTGGTCAGAGACATGAAAAG
ATCATGCTGGAAGAGTTCCTTGGGAGGCCTCCATTAGTTTCCAAAAGTGT
TCTTGTAAGCATTAAAATTCCATGCTGGAAGTCAAGTAGGGATATTTCTT
ACTTGCTATATGAAACCTATAGAGCTGCACCACGCCCTATTGGAAATGCT
CTTTCCTATTTGAATGCGGCTTTCTTGGCTGAGGTTTCTCTTTGTAAAAA
TTCTGCTGGAATTATTCTAAATAACTGTCGGTTGGCTTTTGGTGCTTATG
GAACAAAACATTCAATCAGAGCAAGGAAAGTTGAAGAGTTTCTATCTGCG
AAATTGCTAAATGGAGGTGTTCTATATGAGGCTATTAAACTCCTTGAAAG
TACTGTATTACCTGAAGACGGGACCTCCAGTCCTGCTTATAGATCCAGCT
TGGCTGTTGGCTTTCTCTTTGAGTTCCTAAGTCCCTTAATTAACAACCCA
GATGATATTAATAGCTTTCAACGTGATGGATATAATAGCACTTTGCTGTT
CAAGGATTCCAAAATAAAACAGAATTTTGACCAGTTTGATCAAATCGAAC
CCTCAACTTTGTTATCATCTGCAAAGCAGGTGATTCAGTTGAGTGAAGAA
TACCATCCAGTTGGAAAGCCAATTACAAAAGCTGGAGCCACCATCCAAGC
TTCTGGTGAGGCCGTTTATGTGGATGACATTCCATCGCCAAGAAATTGCC
TACATGGAGCATTTATTTATAGCACAGAGCCTCTGGCGCGGGTGAAGGGC
ATAAAATTTAAGCCCGGATCATCACTTGATGGAGTCACCACACTTATTTC
TTTCAAAGACATTCCTGGGGAGAATGTAGGTTCTCAGACCATGTTTGGTA
GTGAACCTTTATATGCAGATGAGCTTACTCAATGTGCCGGTCAGCGCATT
GCCTTAGTGGTTGCAGATACACAGAAAAATGCAGACATGGCAGCCAACCT
TGCAGTGATTGATTATGACAAGGAGGATCTAGAACCAATATTATCTGTAG
AAGAGGCTTTTGAGAGATGTAGTTTTTTTGAGGTCCCTCCTTACCTTTAC
CCTGAACAGGTTGGTGATTATTCAAAGGGAATGGCTGAAGCTGATCATCA
AATTCTCTCTTCTGAGATCAAACTTGGATCACAATACTATTTCTATATGG
AGACACAAACAGCTCTTGCTGTGCCAGATGAAGACAACTGCATGGTAGTA
TACAGTTCAAGTCAATGCCCTGAGACTGCACATGATACAATAGCAAAATG
CCTTGGTGTACCTGGACACGATGTTCGTGTGATTACAAGAAGGGTCGGAG
GAGGATTTGGTGGAAAGGCCATAAAAGCAATGCCTGTTTCTACGGCATGC
GCTCTTGCTGCTTACAAACTACACCGTCCAGTCAGGATGTATGTCAATCG
CAAGACTGATATGATAATGGCAGGAGGAAGGCATCCAATGAAAATAACTT
ACAGTGTAGGATTCAAAACTAATGGGAAGATCACAGCCCTTAAACTTGAT
ATACTAATTGATGCAGGGATGTCACTCGATATAAGTCCAATTATGCCACA
TAATATACTTGGTTCACTTAAAAAGTATGACTGGGGTGCATTAGCTTTCG
ATATAAAGGTATGCAAAACAAACCTTCCAAGTAGATCGGCAATGAGGGCC
CCTGGGGAGGTACAGGCATCATTTATTGCTGAAGCTATAATTGAACATGT
TGCATCTGCCCTTCCCCTGGGAGTAGATTCTGTCAGAAATATTAATCTCC
ATAACTATGAAAGCCTTGAATTATTTTTCAAGACCGGTGCCGGTGAACCT
TTGGAGTATACTTTACCTTCTATATGGGATAAGTTGGCCATGTCTTCAAG
CTTTTACCATAGAACTGAAATGATAAAAGAATTTAATAGGTGCAATAAGT
GGCGGAAAAGGGGAATTTCTCGAGTGCCTATTGTGCATCACGTAACGTTG
AGAGCAACCCCTGGGAAAGTAAGCATTCTACGTGATGGATCTATTGTTGT
TGAAGTTGGGGGAATTGAGCTGGGTCAGGGTCTCTGGACAAAGGTAAAAC
AGATGACTGCATATGCTCTTAGTTTGGTCCAATGTGGTGGAACAGAAGAA
CTTTTGGAGAAGGTGAGGGTCATACAAGCTGATACCTTGAGTTTAATTCA
AGGTGGTTTCACTGCTGGCAGCACAACATCCGAATCGAGCTGTGAAGCTG
TAAGACTTTGCTGCAATATCTTGGTTGAGAGACTTACCGCTCTCAAGGAA
AAATTGGTAGAGCAAATGGGATCTATAAAATGGGAGACACTGATTCTTCA
GGCCTATGGGAGTTCTGTGAACTTATCAACTAATTCCTTATATGTACCAG
ACTTCTCTTCCATGCAATACTTAAATTATGGTGCTGCAGTGAGTGAGGTG
GAGGTAAACCTTTTAACTGGCCAAACCACAATATTACAGACAGATATCAT
ATATGATTGCGGCCAAAGCTTGAATCCTGCTGTGGATTTGGGACAGATTG
AGGGAGCTTTTGTTCAAGGAATAGGGTTCTTTATGCTTGAAGAATACCCC
ACAAACTCAAATGGCTTAGTGGTTGCAGAAGGCACTTGGACTTATAAAAT
CCCTACAGTGGACACTATACCTAAACAATTTAATGTTGAAATCCTGAACA
GCGGACATCATAAAAAACGTATACTTTCATCAAAAGCTTCTGGAGAGCCA
CCGCTAACTCTAGCAGTTTCTGTACACTGTGCTATAAGAGCAGCTATAAA
AGAAGCCAGGCGGCAACTTCATTCATGGGGTGGCTTAGACGAGTCTAATT
CTACATTTCAGTTGGAGGTACCTGCCACCATGCCTGTCGTGAAGGAGCTC
TGTGGGCTTGATAGTGTTCAGAGGTTCTTACAGTGGACAATAGGCAGCAA
GTGA
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protein sequence of Tc09v2_p022180.3

>Tc09v2_p022180.3 ID=Tc09v2_p022180.3|Name=Tc09v2_p022180.3|organism=Theobroma cacao|type=polypeptide|length=1368bp
MGEHTNTTTTTKTEQSLVFAVNGQRFELSEVDPSTTLLEFLRSQTSFKSV
KLGCGEGGCGACVVLQSKYDPVHDKVEDFTVSSCLTLLCSVNGCSITTAE
GVGNSKDGFHPIQERFSGFHASQCGYCTPGMCVSLYSALVNADKTNRPEP
RPGFSKLSVSEAEKSIAGNLCRCTGYRPIVDACKTFAADVDMEDLGLNSF
WKKGESDEVKLSRLPPYHHNNGTCMFPEFLKKEITAGVNLASEGYYWYSP
VCLDQLQSLLQMDEENDGTSTKIVVGNTGMGYYKEVVRHNKYIDLRYIPE
LSIIRKDLAGIEIGASVPISKAIEALKEVNEGELNQEGNLVFKKLADHME
RIASGFIRNSASIGGNLIMAQRKHFPSDIATILLSVDTMVDILTGQRHEK
IMLEEFLGRPPLVSKSVLVSIKIPCWKSSRDISYLLYETYRAAPRPIGNA
LSYLNAAFLAEVSLCKNSAGIILNNCRLAFGAYGTKHSIRARKVEEFLSA
KLLNGGVLYEAIKLLESTVLPEDGTSSPAYRSSLAVGFLFEFLSPLINNP
DDINSFQRDGYNSTLLFKDSKIKQNFDQFDQIEPSTLLSSAKQVIQLSEE
YHPVGKPITKAGATIQASGEAVYVDDIPSPRNCLHGAFIYSTEPLARVKG
IKFKPGSSLDGVTTLISFKDIPGENVGSQTMFGSEPLYADELTQCAGQRI
ALVVADTQKNADMAANLAVIDYDKEDLEPILSVEEAFERCSFFEVPPYLY
PEQVGDYSKGMAEADHQILSSEIKLGSQYYFYMETQTALAVPDEDNCMVV
YSSSQCPETAHDTIAKCLGVPGHDVRVITRRVGGGFGGKAIKAMPVSTAC
ALAAYKLHRPVRMYVNRKTDMIMAGGRHPMKITYSVGFKTNGKITALKLD
ILIDAGMSLDISPIMPHNILGSLKKYDWGALAFDIKVCKTNLPSRSAMRA
PGEVQASFIAEAIIEHVASALPLGVDSVRNINLHNYESLELFFKTGAGEP
LEYTLPSIWDKLAMSSSFYHRTEMIKEFNRCNKWRKRGISRVPIVHHVTL
RATPGKVSILRDGSIVVEVGGIELGQGLWTKVKQMTAYALSLVQCGGTEE
LLEKVRVIQADTLSLIQGGFTAGSTTSESSCEAVRLCCNILVERLTALKE
KLVEQMGSIKWETLILQAYGSSVNLSTNSLYVPDFSSMQYLNYGAAVSEV
EVNLLTGQTTILQTDIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYP
TNSNGLVVAEGTWTYKIPTVDTIPKQFNVEILNSGHHKKRILSSKASGEP
PLTLAVSVHCAIRAAIKEARRQLHSWGGLDESNSTFQLEVPATMPVVKEL
CGLDSVQRFLQWTIGSK*
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