Tc09v2_t019240.1

Overview
NameTc09v2_t019240.1
Unique NameTc09v2_t019240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length837
Properties
Property NameValue
NoteArogenate dehydrogenase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productarogenate dehydrogenase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589809
GenbankXM_018127654.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g019240Tc09v2_g019240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p019240.1Tc09v2_p019240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto461533auto461533Theobroma cacaoexon
exon-auto461534auto461534Theobroma cacaoexon
exon-auto461535auto461535Theobroma cacaoexon
exon-auto461536auto461536Theobroma cacaoexon
exon-auto461537auto461537Theobroma cacaoexon
exon-auto461538auto461538Theobroma cacaoexon
exon-auto461539auto461539Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto461540auto461540Theobroma cacaoCDS
CDS-auto461541auto461541Theobroma cacaoCDS
CDS-auto461542auto461542Theobroma cacaoCDS
CDS-auto461543auto461543Theobroma cacaoCDS
CDS-auto461544auto461544Theobroma cacaoCDS
CDS-auto461545auto461545Theobroma cacaoCDS
CDS-auto461546auto461546Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t019240.1 ID=Tc09v2_t019240.1|Name=Tc09v2_t019240.1|organism=Theobroma cacao|type=mRNA|length=837bp
ATGTCTTCTTCATCTGATTCCTTTTCCTCACAGACACTAAATATAGGCAT
AGTCGGTTTTGGCACATTTGGGCAGTTCCTGGCAAAGACAATGATCCAAC
AAGGCCATACCATAAGTGCAACTTCTCGGACAGATTATTCCCAGCTGTGT
CATCAATTGGGTATTTCCTTCTTCAGGGATGTAGCTGCATTCGTTGAAGC
AGATAACGATGTCATATTGCTAAGCACATCCATCCTATCTCTATCAAAGA
TGCTCAAGTCAATCCCATTCCGTTGCCTTAAACGCCGGACACTCTTCGTC
GACGTGCTTTCCGTCAAAGAACACCCAAGAGACGTTCTCTTGCAAGTTTT
GCCAGAGGAAATGGACTTGCTTTGCACTCATCCCATGTTTGGACCCGAAA
GTGGCAAAAGTGGGTGGGAAGATCTTGTTTTAATGTATGACAAAGTTCGG
GTGAGGGATGAAGCTACGTGTTCCAGCTTCCTACGCATCTTTGAACGTCA
GGGTTGCAGAATGATGCAAATGTCCTGTGAAGAACATGACAGACTGGCTG
CTAGGAGTCAATTTCTTACTCATGCTATCGGCAGGATTTTGTCAGAAACC
GGAATTGAATCTACGTCAATTAACACCAAAAGCTTCGAAACACTAGTTAA
ATTGAAAGAGAGCACCACCAATGATAGTTTCGATCTGTTCAGCGGATTAT
TCATCCATAACAGATTTGCCAAACAAGAGTTGATGAATCTAGAGCATGCT
TTTCAAATGGTCAAGAAGAAGCTGCTACAGACGGCGAACGAAGAGCAAAT
TCCCAACAAGTCTAACCATCAAATGGACTCTTGCTAA
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protein sequence of Tc09v2_p019240.1

>Tc09v2_p019240.1 ID=Tc09v2_p019240.1|Name=Tc09v2_p019240.1|organism=Theobroma cacao|type=polypeptide|length=279bp
MSSSSDSFSSQTLNIGIVGFGTFGQFLAKTMIQQGHTISATSRTDYSQLC
HQLGISFFRDVAAFVEADNDVILLSTSILSLSKMLKSIPFRCLKRRTLFV
DVLSVKEHPRDVLLQVLPEEMDLLCTHPMFGPESGKSGWEDLVLMYDKVR
VRDEATCSSFLRIFERQGCRMMQMSCEEHDRLAARSQFLTHAIGRILSET
GIESTSINTKSFETLVKLKESTTNDSFDLFSGLFIHNRFAKQELMNLEHA
FQMVKKKLLQTANEEQIPNKSNHQMDSC*
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