Tc09v2_t015080.3

Overview
NameTc09v2_t015080.3
Unique NameTc09v2_t015080.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length237
Properties
Property NameValue
NoteUncharacterized protein
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productuncharacterized LOC18589274, transcript variant X16
Cross References
External references for this mRNA
DatabaseAccession
GeneID18589274
GenbankXM_018126998.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g015080Tc09v2_g015080Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p015080.3Tc09v2_p015080.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto452875auto452875Theobroma cacaoexon
exon-auto452876auto452876Theobroma cacaoexon
exon-auto452877auto452877Theobroma cacaoexon
exon-auto452878auto452878Theobroma cacaoexon
exon-auto452879auto452879Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto452880auto452880Theobroma cacaoCDS
CDS-auto452881auto452881Theobroma cacaoCDS
CDS-auto452882auto452882Theobroma cacaoCDS
CDS-auto452883auto452883Theobroma cacaoCDS
CDS-auto452884auto452884Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t015080.3 ID=Tc09v2_t015080.3|Name=Tc09v2_t015080.3|organism=Theobroma cacao|type=mRNA|length=237bp
ATGACTCTCGACCTACTACATGATCATAGTTGCTCCTCATATTTTATCAG
CGGCAGGATCCCTTTGTTTGGCAGGCTTAAGGTGATGGTCATCAGATTAC
AGGACTTGTTGCAAGAGGAGCAATGCTTTCTGGTCTTTCACATTGAATGC
AGTTCAATGTATCATACTGCTGCTGAAGTGGGATGCCAGTTTGAGGCAGA
TTTCAATTTTCTGATGGCTACAATATTAAAGGATTAA
back to top

protein sequence of Tc09v2_p015080.3

>Tc09v2_p015080.3 ID=Tc09v2_p015080.3|Name=Tc09v2_p015080.3|organism=Theobroma cacao|type=polypeptide|length=79bp
MTLDLLHDHSCSSYFISGRIPLFGRLKVMVIRLQDLLQEEQCFLVFHIEC
SSMYHTAAEVGCQFEADFNFLMATILKD*
back to top