Tc09v2_t009990.1

Overview
NameTc09v2_t009990.1
Unique NameTc09v2_t009990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length651
Properties
Property NameValue
NotePutative Auxin-responsive protein IAA16
Model evidenceSupporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productauxin-responsive protein IAA1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588658
GenbankXM_018126683.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009990Tc09v2_g009990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009990.1Tc09v2_p009990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto442675auto442675Theobroma cacaoexon
exon-auto442676auto442676Theobroma cacaoexon
exon-auto442677auto442677Theobroma cacaoexon
exon-auto442678auto442678Theobroma cacaoexon
exon-auto442679auto442679Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto442680auto442680Theobroma cacaoCDS
CDS-auto442681auto442681Theobroma cacaoCDS
CDS-auto442682auto442682Theobroma cacaoCDS
CDS-auto442683auto442683Theobroma cacaoCDS
CDS-auto442684auto442684Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009990.1 ID=Tc09v2_t009990.1|Name=Tc09v2_t009990.1|organism=Theobroma cacao|type=mRNA|length=651bp
ATGTCATTGGAAGAAGCACCGGGCTCACTGGAGAGTGACGTCACCAGCAT
GCGTTTTGAGGATACGGAGCTGACTTTGGGATTGCCAGGGGAGGGACGAT
CGCCGGCTGTTATCGCCGGTGTTAAGTGCTCTGCAAAACGTGGGTTCGTT
GAGACCGTTGATCTTAAACTCGGGAGCTGTAGCAGGGCCCCAAGTGGAGG
TGGTGACACGCATGTTAATGAAGCCGGTGCCGGAAAACCTCCTCCTGCAA
AGGCACAAGTTATCGGTTGGCCACCGGTGAGATCATCTAGAAAGAAGGCT
ATTAATGAGAGCTGCAAGTACGTGAAGGTGGCCGTGGATGGAGCACCCTA
TCTCCGCAAAGTAAACCTAGGAGTTTACTCCAATTACCACGACCTGATGA
AACATTTAGAGAATTTGTTTACCTGCTGCATTATCCGTAAAGCAGATAGG
GAGGAAAGCAAGGTTATGGATGCGGTGAAGGGAATGGAGTATGTGCCAAC
TTATGAAGATAAAGACGGTGACTGGATGTTGGTTGGAGATGTTCCTTGGA
AGATGTTCATAGAATCTTGCAAGCGTATTCGTTTGATGAAAAGCTCAGAG
GCTGCTGTTTTAGCACCAAAAGCTTCTCTAAAATGCTCAGGCACATGTTG
A
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protein sequence of Tc09v2_p009990.1

>Tc09v2_p009990.1 ID=Tc09v2_p009990.1|Name=Tc09v2_p009990.1|organism=Theobroma cacao|type=polypeptide|length=217bp
MSLEEAPGSLESDVTSMRFEDTELTLGLPGEGRSPAVIAGVKCSAKRGFV
ETVDLKLGSCSRAPSGGGDTHVNEAGAGKPPPAKAQVIGWPPVRSSRKKA
INESCKYVKVAVDGAPYLRKVNLGVYSNYHDLMKHLENLFTCCIIRKADR
EESKVMDAVKGMEYVPTYEDKDGDWMLVGDVPWKMFIESCKRIRLMKSSE
AAVLAPKASLKCSGTC*
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